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Estimation of the in vivo recombination rate for a plant RNA virus

https://doi.org/10.1099/vir.0.060822-0
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Increase in the Relative Fitness of a Plant Virus RNA Associated with Its Recombinant Nature
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New Insights into the Mechanisms of RNA Recombination
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Contribution of Mutation and RNA Recombination to the Evolution of a Plant Pathogenic RNA
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A phylogenetic survey of recombination frequency in plant RNA viruses
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The relation of recombination to mutational advance
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Establishing a genetic recombination map for murine coronavirus strain A59 complementation groups
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The mechanism of RNA recombination in poliovirus
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Hepatitis C virus RNA recombination in cell culture
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A real-time RT-PCR assay for quantifying the fitness of tobacco etch virus in competition experiments
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Pacing a small cage: mutation and RNA viruses
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Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus
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Why do RNA viruses recombine?
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Dynamics of HIV-1 recombination in its natural target cells
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An overlapping essential gene in the Potyviridae
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Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
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Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination.
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Tagging of plant potyvirus replication and movement by insertion of beta-glucuronidase into the viral polyprotein.
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Genetic recombination of poliovirus in a cell-free system
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Some Genetic Aspects of Sex
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The Rate and Character of Spontaneous Mutation in an RNA Virus
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Preferred sites of recombination in poliovirus RNA: an analysis of 40 intertypic cross-over sequences
inferredcites →https://doi.org/10.1093/nar/18.7.1687openalex-snapshot
DNA recombination during PCR
inferredcites →https://doi.org/10.1098/rsbl.2008.0762openalex-snapshot
Upper-limit mutation rate estimation for a plant RNA virus
inferredcites →https://doi.org/10.1099/0022-1317-73-1-1openalex-snapshot
Highlights and prospects of potyvirus molecular biology
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Frequent occurrence of recombinant potyvirus isolates
inferredcites →https://doi.org/10.1099/vir.0.007724-0openalex-snapshot
Rapid host adaptation by extensive recombination
inferredcites →https://doi.org/10.1099/vir.0.008193-0openalex-snapshot
Contribution of recombination and selection to molecular evolution of Citrus tristeza virus
inferredcites →https://doi.org/10.1099/vir.0.19245-0openalex-snapshot
Fluorescent labelling reveals spatial separation of potyvirus populations in mixed infected Nicotiana benthamiana plants
inferredcites →https://doi.org/10.1099/vir.0.2008/000166-0openalex-snapshot
The promiscuous evolutionary history of the family Bromoviridae
inferredcites →https://doi.org/10.1099/vir.0.82335-0openalex-snapshot
Patterns of recombination in turnip mosaic virus genomic sequences indicate hotspots of recombination
inferredcites →https://doi.org/10.1111/j.1469-1809.1943.tb02321.xopenalex-snapshot
THE ESTIMATION OF MAP DISTANCES FROM RECOMBINATION VALUES
inferredcites →https://doi.org/10.1128/jvi.00273-06openalex-snapshot
High Rate of Genetic Recombination in Murine Leukemia Virus: Implications for Influencing Proviral Ploidy
inferredcites →https://doi.org/10.1128/jvi.00636-09openalex-snapshot
The Multiplicity of Infection of a Plant Virus Varies during Colonization of Its Eukaryotic Host
inferredcites →https://doi.org/10.1128/jvi.00694-10openalex-snapshot
Viral Mutation Rates
inferredcites →https://doi.org/10.1128/jvi.01892-12openalex-snapshot
Fixation of Emerging Interviral Recombinants in Cucumber Mosaic Virus Populations
inferredcites →https://doi.org/10.1128/jvi.02528-06openalex-snapshot
Fitness Declines in Tobacco Etch Virus upon Serial Bottleneck Transfers
inferredcites →https://doi.org/10.1128/jvi.67.10.5968-5975.1993openalex-snapshot
Spontaneous mutagenesis of a plant potyvirus genome after insertion of a foreign gene
inferredcites →https://doi.org/10.1128/jvi.72.2.1195-1202.1998openalex-snapshot
Retroviral Recombination Rates Do Not Increase Linearly with Marker Distance and Are Limited by the Size of the Recombining Subpopulation
inferredcites →https://doi.org/10.1128/jvi.74.3.1234-1240.2000openalex-snapshot
High Rate of Recombination throughout the Human Immunodeficiency Virus Type 1 Genome
inferredcites →https://doi.org/10.1128/jvi.74.9.4214-4219.2000openalex-snapshot
Frequent Homologous Recombination Events between Molecules of One RNA Component in a Multipartite RNA Virus
inferredcites →https://doi.org/10.1128/jvi.76.24.12654-12662.2002openalex-snapshot
RNA Recombination in Brome Mosaic Virus: Effects of Strand-Specific Stem-Loop Inserts
inferredcites →https://doi.org/10.1128/jvi.76.8.4119-4124.2002openalex-snapshot
Inter- and Intramolecular Recombinations in theCucumber Mosaic VirusGenome Related to Adaptation to Alstroemeria
inferredcites →https://doi.org/10.1128/jvi.79.18.11555-11558.2005openalex-snapshot
Adaptive Value of High Mutation Rates of RNA Viruses: Separating Causes from Consequences
inferredcites →https://doi.org/10.1128/jvi.79.9.5732-5742.2005openalex-snapshot
Homologous Crossovers among Molecules of Brome Mosaic Bromovirus RNA1 or RNA2 Segments In Vivo
inferredcites →https://doi.org/10.1146/annurev-phyto-072910-095351openalex-snapshot
RNA-RNA Recombination in Plant Virus Replication and Evolution
inferredcites →https://doi.org/10.1371/journal.pbio.0030089openalex-snapshot
Recombination Every Day: Abundant Recombination in a Virus during a Single Multi-Cellular Host Infection
inferredcites →https://doi.org/10.1371/journal.pcbi.1000660openalex-snapshot
Recombination Rate and Selection Strength in HIV Intra-patient Evolution
inferredcites →https://doi.org/10.1371/journal.pgen.0010051openalex-snapshot
The Evolutionary Value of Recombination Is Constrained by Genome Modularity
inferredcites →https://doi.org/10.1371/journal.pgen.1002378openalex-snapshot
Effect of Host Species on the Distribution of Mutational Fitness Effects for an RNA Virus
inferredcites →https://doi.org/10.1371/journal.pgen.1004186openalex-snapshot
Within-Host Spatiotemporal Dynamics of Plant Virus Infection at the Cellular Level
inferredcites →https://doi.org/10.1371/journal.pone.0064657openalex-snapshot
Model-Selection-Based Approach for Calculating Cellular Multiplicity of Infection during Virus Colonization of Multi-Cellular Hosts
inferredcites →https://doi.org/10.1371/journal.ppat.1001113openalex-snapshot
Dynamics of the Multiplicity of Cellular Infection in a Plant Virus
inferredcites →https://doi.org/10.1371/journal.ppat.1002122openalex-snapshot
One Is Enough: In Vivo Effective Population Size Is Dose-Dependent for a Plant RNA Virus
inferredcites →https://doi.org/10.1534/genetics.110.115915openalex-snapshot
The Rate and Spectrum of Spontaneous Mutations in a Plant RNA Virus
inferredcites →https://doi.org/10.1534/genetics.111.129114openalex-snapshot
Dynamics of a Plant RNA Virus Intracellular Accumulation: Stamping Machine vs. Geometric Replication
inferredcites →https://doi.org/10.2144/000113219openalex-snapshot
Reducing the Impact of PCR-Mediated Recombination in Molecular Evolution and Environmental Studies Using a New-Generation High-Fidelity DNA Polymerase
inferredcites →https://doi.org/10.3390/v3102006openalex-snapshot
Recombination in Hepatitis C Virus
inferredcites →https://doi.org/10.5962/bhl.title.27468openalex-snapshot
The genetical theory of natural selection

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The Last Shall be First in the Virus Kingdom
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The non-canonical tomato yellow leaf curl virus recombinant that displaced its parental viruses in southern Morocco exhibits a high selective advantage in experimental conditions
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Different potato virus Y strains frequently co-localize in single epidermal leaf cells and in the aphid stylet
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Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y
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Interviral Recombination between Plant, Insect, and Fungal RNA Viruses: Role of the Intracellular Ca 2+ /Mn 2+ Pump
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Effect of Host Species on Topography of the Fitness Landscape for a Plant RNA Virus
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Screening bacterial effectors and human virus proteins in yeast to identify host factors driving tombusvirus RNA recombination: a role for autophagy and membrane phospholipid content
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Deep Sequencing of Virus-Derived Small Interfering RNAs and RNA from Viral Particles Shows Highly Similar Mutational Landscapes of a Plant Virus Population
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Classification of small ruminant lentivirus subtype A2, subgroups 1 and 2 based on whole genome comparisons and complex recombination patterns
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