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Genomic and transcriptomic insights into the regulation of snake venom production

https://doi.org/10.1101/008474
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Rapid Evolution by Positive Selection and Gene Gain and Loss: PLA2 Venom Genes in Closely Related Sistrurus Rattlesnakes with Divergent Diets
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Preservation of duplicate genes by originalization
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Snake venom variability: methods of study, results and interpretation
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Gene expression in Echis carinatus (carpet viper) venom glands following milking
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Inducibility of κ immunoglobulin enhancer-binding protein NF-κB by a posttranslational mechanism
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Fos and jun: The AP-1 connection
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Genomic mapping by fingerprinting random clones: A mathematical analysis
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Unique gene organization of colubrid three-finger toxins: Complete cDNA and gene sequences of denmotoxin, a bird-specific toxin from colubrid snake Boiga dendrophila (Mangrove Catsnake)
inferredcites →https://doi.org/10.1016/j.biochi.2009.02.001openalex-snapshot
Crotalus durissus collilineatus venom gland transcriptome: Analysis of gene expression profile
inferredcites →https://doi.org/10.1016/j.cbpa.2008.04.607openalex-snapshot
α1-adrenoceptors trigger the snake venom production cycle in secretory cells by activating phosphatidylinositol 4,5-bisphosphate hydrolysis and ERK signaling pathway
inferredcites →https://doi.org/10.1016/j.cbpc.2007.02.009openalex-snapshot
Variability in expression of Bothrops insularis snake venom proteases: An ontogenetic approach
inferredcites →https://doi.org/10.1016/j.cell.2007.02.005openalex-snapshot
Chromatin Modifications and Their Function
inferredcites →https://doi.org/10.1016/j.cell.2008.04.027openalex-snapshot
Poised RNA Polymerase II Gives Pause for Thought
inferredcites →https://doi.org/10.1016/j.gene.2004.03.024openalex-snapshot
Bitis gabonica (Gaboon viper) snake venom gland: toward a catalog for the full-length transcripts (cDNA) and proteins
inferredcites →https://doi.org/10.1016/j.gene.2006.03.008openalex-snapshot
Venom gland EST analysis of the saw-scaled viper, Echis ocellatus, reveals novel α9β1 integrin-binding motifs in venom metalloproteinases and a new group of putative toxins, renin-like aspartic proteases
inferredcites →https://doi.org/10.1016/j.gene.2010.04.001openalex-snapshot
Unique structural characteristics and evolution of a cluster of venom phospholipase A2 isozyme genes of Protobothrops flavoviridis snake
inferredcites →https://doi.org/10.1016/j.gene.2012.01.009openalex-snapshot
Venom evolution through gene duplications
inferredcites →https://doi.org/10.1016/j.jprot.2008.10.003openalex-snapshot
Combined snake venomics and venom gland transcriptomic analysis of the ocellated carpet viper, Echis ocellatus
inferredcites →https://doi.org/10.1016/j.jprot.2014.01.013openalex-snapshot
Intraspecific venom variation in the medically significant Southern Pacific Rattlesnake (Crotalus oreganus helleri): Biodiscovery, clinical and evolutionary implications
inferredcites →https://doi.org/10.1016/j.jprot.2014.02.027openalex-snapshot
Eastern coral snake Micrurus fulvius venom toxicity in mice is mainly determined by neurotoxic phospholipases A2
inferredcites →https://doi.org/10.1016/j.molmed.2008.08.005openalex-snapshot
Arachidonic-acid-derived eicosanoids: roles in biology and immunopathology
inferredcites →https://doi.org/10.1016/j.toxicon.2003.10.019openalex-snapshot
Structure and chromosomal localization of the gene for crotamine, a toxin from the South American rattlesnake, Crotalus durissus terrificus
inferredcites →https://doi.org/10.1016/j.toxicon.2009.01.006openalex-snapshot
Transcriptome analysis of the Amazonian viper Bothrops atrox venom gland using expressed sequence tags (ESTs)
inferredcites →https://doi.org/10.1016/j.toxicon.2010.07.008openalex-snapshot
Costs of venom production in the common death adder (Acanthophis antarcticus)
inferredcites →https://doi.org/10.1016/j.toxicon.2012.02.006openalex-snapshot
On the ancestral recruitment of metalloproteinases into the venom of snakes
inferredcites →https://doi.org/10.1016/j.toxicon.2014.10.004openalex-snapshot
Testing the Toxicofera: Comparative transcriptomics casts doubt on the single, early evolution of the reptile venom system
inferredcites →https://doi.org/10.1016/j.tree.2012.10.020openalex-snapshot
Complex cocktails: the evolutionary novelty of venoms
inferredcites →https://doi.org/10.1016/s0014-5793(02)03413-0openalex-snapshot
Phospholipase A2 regulation of arachidonic acid mobilization
inferredcites →https://doi.org/10.1016/s0014-5793(98)00894-1openalex-snapshot
Structure and organization of the cardiotoxin genes in Naja naja sputatrix1
inferredcites →https://doi.org/10.1016/s0024-3205(00)00626-3openalex-snapshot
Characterization of β-adrenoceptors responsible for venom production in the venom gland of the snake Bothrops jararaca
inferredcites →https://doi.org/10.1016/s0041-0101(02)00096-xopenalex-snapshot
Ontogenetic variation of metalloproteinases and plasma coagulant activity in venoms of wild Bothrops atrox specimens from Amazonian rain forest
inferredcites →https://doi.org/10.1016/s0041-0101(02)00160-5openalex-snapshot
The organization of the genes encoding the A chains of β-bungarotoxins: evidence for the skipping of exon
inferredcites →https://doi.org/10.1016/s0041-0101(96)00108-0openalex-snapshot
Snake venom metalloproteinases: Structure, function and relationship to the ADAMs family of proteins
inferredcites →https://doi.org/10.1016/s0140-6736(09)61754-2openalex-snapshot
Snake bite
inferredcites →https://doi.org/10.1016/s0378-1119(00)00490-xopenalex-snapshot
Adaptive evolution of animal toxin multigene families
inferredcites →https://doi.org/10.1016/s0955-0674(97)80068-3openalex-snapshot
AP-1 function and regulation
inferredcites →https://doi.org/10.1016/s0968-0004(00)01551-6openalex-snapshot
Histone deacetylases: silencers for hire
inferredcites →https://doi.org/10.1016/s1096-4959(01)00422-5openalex-snapshot
Mojave rattlesnakes (Crotalus scutulatus scutulatus) lacking the acidic subunit DNA sequence lack Mojave toxin in their venom
inferredcites →https://doi.org/10.1017/s0094837300004310openalex-snapshot
Exaptation—a Missing Term in the Science of Form
inferredcites →https://doi.org/10.1021/pr800332popenalex-snapshot
Snake Venomics of the Lancehead Pitviper Bothrops asper : Geographic, Individual, and Ontogenetic Variations
inferredcites →https://doi.org/10.1023/b:bigi.0000043955.35906.c2openalex-snapshot
Molecular Cloning and Evolution of the Genes Encoding the Precursors of Taiwan Cobra Cardiotoxin and Cardiotoxin-Like Basic Protein
inferredcites →https://doi.org/10.1038/nature01080openalex-snapshot
Active genes are tri-methylated at K4 of histone H3
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/ncb1076openalex-snapshot
Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot
SignalP 4.0: discriminating signal peptides from transmembrane regions
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/sj.onc.1203219openalex-snapshot
How NF-κB is activated: the role of the IκB kinase (IKK) complex
inferredcites →https://doi.org/10.1046/j.1432-1327.2001.02059.xopenalex-snapshot
Expression of cardiotoxin‐2 gene
inferredcites →https://doi.org/10.1073/pnas.0401866101openalex-snapshot
Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome
inferredcites →https://doi.org/10.1073/pnas.1314475110openalex-snapshot
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
inferredcites →https://doi.org/10.1073/pnas.1314702110openalex-snapshot
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
inferredcites →https://doi.org/10.1073/pnas.1405484111openalex-snapshot
Medically important differences in snake venom composition are dictated by distinct postgenomic mechanisms
inferredcites →https://doi.org/10.1074/jbc.m809071200openalex-snapshot
Snake Venom Vascular Endothelial Growth Factors (VEGF-Fs) Exclusively Vary Their Structures and Functions among Species
inferredcites →https://doi.org/10.1081/txr-120019018openalex-snapshot
Effectiveness of Snake Antivenom: Species and Regional Venom Variation and Its Clinical Impact
inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btm404openalex-snapshot
Clustal W and Clustal X version 2.0
inferredcites →https://doi.org/10.1093/gbe/evu166openalex-snapshot
Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins
inferredcites →https://doi.org/10.1093/nar/18.9.2607openalex-snapshot
Chicken NFI/TGGCA proteins are encoded by at least three independent genes: NFI-A, NFI-B and NFI-C with homologues in mammalian genomes
inferredcites →https://doi.org/10.1093/nar/19.23.6641openalex-snapshot
Identification of a fourth Nuclear Factor I gene in chicken by cDNA cloning: NFI-X
inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot
KAAS: an automatic genome annotation and pathway reconstruction server
inferredcites →https://doi.org/10.1093/nar/gkr988openalex-snapshot
KEGG for integration and interpretation of large-scale molecular data sets
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026382openalex-snapshot
Structure and Phylogeny of the Venom Group I Phospholipase A2 Gene
inferredcites →https://doi.org/10.1101/gad.1198204openalex-snapshot
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
inferredcites →https://doi.org/10.1101/gad.183434.111openalex-snapshot
NF-κB, the first quarter-century: remarkable progress and outstanding questions
inferredcites →https://doi.org/10.1101/gad.9.5.559openalex-snapshot
Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation.
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.3007205openalex-snapshot
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
inferredcites →https://doi.org/10.1101/gr.3228405openalex-snapshot
From genome to “venome”: Molecular origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences and related body proteins
inferredcites →https://doi.org/10.1111/j.1538-7836.2006.02266.xopenalex-snapshot
Structure of two genes encoding parallel prothrombin activators in Tropidechis carinatus snake: gene duplication and recruitment of factor X gene to the venom gland
inferredcites →https://doi.org/10.1126/science.1150843openalex-snapshot
Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II
inferredcites →https://doi.org/10.1136/gut.52.1.144openalex-snapshot
Mitogen activated protein (MAP) kinase signal transduction pathways and novel anti-inflammatory targets
inferredcites →https://doi.org/10.1146/annurev-biophys-083012-130338openalex-snapshot
Molecular Basis of NF-κB Signaling
inferredcites →https://doi.org/10.1146/annurev.ph.48.030186.000451openalex-snapshot
Identification of Cellular Activation Mechanisms Associated with Salivary Secretion
inferredcites →https://doi.org/10.1146/annurev.physiol.67.041703.084745openalex-snapshot
REGULATION OF FLUID AND ELECTROLYTE SECRETION IN SALIVARY GLAND ACINAR CELLS
inferredcites →https://doi.org/10.1160/th04-03-0144openalex-snapshot
The catalytic subunit of pseutarin C, a group C prothrombin activator from the venom of Pseudonaja textilis, is structurally similar to mammalian blood coagulation factor Xa
inferredcites →https://doi.org/10.1177/002215549904700414openalex-snapshot
In Situ Hybridization and Immunohistochemical Analysis of the Expression of Cardiotoxin and Neurotoxin Genes in Naja naja sputatrix
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2148-7-2openalex-snapshot
Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes.
inferredcites →https://doi.org/10.1186/1471-2164-10-564openalex-snapshot
Comparative venom gland transcriptome surveys of the saw-scaled vipers (Viperidae: Echis) reveal substantial intra-family gene diversity and novel venom transcripts
inferredcites →https://doi.org/10.1186/1471-2164-13-312openalex-snapshot
The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
inferredcites →https://doi.org/10.1186/1471-2164-14-1openalex-snapshot
The complex transcriptional landscape of the anucleate human platelet
inferredcites →https://doi.org/10.1186/1471-2164-14-790openalex-snapshot
Quantitative high-throughput profiling of snake venom gland transcriptomes and proteomes (Ovophis okinavensis and Protobothrops flavoviridis)
inferredcites →https://doi.org/10.1186/1477-5956-4-11openalex-snapshot
Ontogenetic variations in the venom proteome of the Amazonian snake Bothrops atrox
inferredcites →https://doi.org/10.1186/2047-217x-2-1openalex-snapshot
Peering into peer-review at GigaScience
inferredcites →https://doi.org/10.1242/jeb.00778openalex-snapshot
Stimulation of the α-adrenoceptor triggers the venom production cycle in the venom gland of Bothrops jararaca
inferredcites →https://doi.org/10.1242/jeb.030197openalex-snapshot
Sympathetic outflow activates the venom gland of the snakeBothrops jararacaby regulating the activation of transcription factors and the synthesis of venom gland proteins
inferredcites →https://doi.org/10.1371/journal.pmed.0050218openalex-snapshot
The Global Burden of Snakebite: A Literature Analysis and Modelling Based on Regional Estimates of Envenoming and Deaths
inferredcites →https://doi.org/10.1371/journal.pntd.0000569openalex-snapshot
Snake Envenoming: A Disease of Poverty
inferredcites →https://doi.org/10.1371/journal.pntd.0001018openalex-snapshot
Snakebite Mortality in India: A Nationally Representative Mortality Survey
inferredcites →https://doi.org/10.1371/journal.pone.0041888openalex-snapshot
Unusual Stability of Messenger RNA in Snake Venom Reveals Gene Expression Dynamics of Venom Replenishment
inferredcites →https://doi.org/10.1371/journal.pone.0081827openalex-snapshot
Molecular Evolution of Vertebrate Neurotrophins: Co-Option of the Highly Conserved Nerve Growth Factor Gene into the Advanced Snake Venom Arsenalf
inferredcites →https://doi.org/10.1643/0045-8511(2006)6[818:copvit]2.0.co;2openalex-snapshot
Cost of Producing Venom in Three North American Pitviper Species
inferredcites →https://doi.org/10.2994/1808-9798(2008)3[43:ocitvo]2.0.co;2openalex-snapshot
Ontogenetic changes in the venom of Bothrops insularis (Serpentes: Viperidae)and its biological implication

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1080/23802359.2019.1598784openalex-snapshot
The complete mitochondrial genome of Echis coloratus (painted carpet viper)
inferred← citeshttps://doi.org/10.1101/gr.276251.121openalex-snapshot
Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways
inferred← citeshttps://doi.org/10.5772/intechopen.91960openalex-snapshot
Venomics Study of Protobothrops flavoviridis Snake: How Venom Proteins Have Evolved and Diversified?
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