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Indication of family-specific DNA methylation patterns in developing oysters

https://doi.org/10.1101/012831
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00438-012-0704-xopenalex-snapshot
Natural epigenetic variation in the female great roundleaf bat (Hipposideros armiger) populations
inferredcites →https://doi.org/10.1007/s10126-013-9523-2openalex-snapshot
DNA Methylation Is Crucial for the Early Development in the Oyster C. gigas
inferredcites →https://doi.org/10.1007/s13258-013-0114-4openalex-snapshot
Genetic and epigenetic variation in mass selection populations of Pacific oyster Crassostrea gigas
inferredcites →https://doi.org/10.1007/s13258-014-0246-1openalex-snapshot
Analysis of DNA methylation in tissues and development stages of pearl oyster Pinctada fucata
inferredcites →https://doi.org/10.1016/0092-8674(92)90611-fopenalex-snapshot
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
inferredcites →https://doi.org/10.1016/j.cell.2013.04.030openalex-snapshot
Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern
inferredcites →https://doi.org/10.1016/j.cell.2013.04.041openalex-snapshot
Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos
inferredcites →https://doi.org/10.1016/s0092-8674(00)81656-6openalex-snapshot
DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development
inferredcites →https://doi.org/10.1016/s0168-9525(97)01181-5openalex-snapshot
Cytosine methylation and the ecology of intragenomic parasites
inferredcites →https://doi.org/10.1038/35013100openalex-snapshot
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
inferredcites →https://doi.org/10.1038/nature11413openalex-snapshot
The oyster genome reveals stress adaptation and complexity of shell formation
inferredcites →https://doi.org/10.1038/nrg2341openalex-snapshot
DNA methylation landscapes: provocative insights from epigenomics
inferredcites →https://doi.org/10.1073/pnas.0900301106openalex-snapshot
DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera
inferredcites →https://doi.org/10.1073/pnas.0903474106openalex-snapshot
The interaction of TIGIT with PVR and PVRL2 inhibits human NK cell cytotoxicity
inferredcites →https://doi.org/10.1093/bfgp/elt054openalex-snapshot
A context dependent role for DNA methylation in bivalves
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/molbev/msr168openalex-snapshot
Comparative Analyses of DNA Methylation and Sequence Evolution Using Nasonia Genomes
inferredcites →https://doi.org/10.1093/nar/21.6.1351openalex-snapshot
Proposed roles for DNA methylation inAlutranscriptional repression and mutational inactivation
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/gkg573openalex-snapshot
WU-Blast2 server at the European Bioinformatics Institute
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03298.xopenalex-snapshot
Epigenetic differentiation and relationship to adaptive genetic divergence in discrete populations of the violet Viola cazorlensis
inferredcites →https://doi.org/10.1126/science.1153069openalex-snapshot
Nutritional Control of Reproductive Status in Honeybees via DNA Methylation
inferredcites →https://doi.org/10.1155/2012/979751openalex-snapshot
Epigenetic Variation May Compensate for Decreased Genetic Variation with Introductions: A Case Study Using House Sparrows (Passer domesticus) on Two Continents
inferredcites →https://doi.org/10.1159/000084979openalex-snapshot
Repbase Update, a database of eukaryotic repetitive elements
inferredcites →https://doi.org/10.1186/1471-2105-10-232openalex-snapshot
BSMAP: whole genome bisulfite sequence MAPping program
inferredcites →https://doi.org/10.1186/1756-8935-6-38openalex-snapshot
Identical sets of methylated and nonmethylated genes in Ciona intestinalis sperm and muscle cells
inferredcites →https://doi.org/10.1186/gb-2012-13-10-r87openalex-snapshot
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
inferredcites →https://doi.org/10.1371/journal.pbio.1000506openalex-snapshot
The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers
inferredcites →https://doi.org/10.1534/g3.113.009514openalex-snapshot
Genomics of CpG Methylation in Developing and Developed Zebrafish
inferredcites →https://doi.org/10.3389/fphys.2011.00116openalex-snapshot
Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?
inferredcites →https://doi.org/10.3389/fphys.2014.00062openalex-snapshot
The role of DNA methylation on Octopus vulgaris development and their perspectives
inferredcites →https://doi.org/10.3389/fphys.2014.00224openalex-snapshot
Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes
inferredcites →https://doi.org/10.7717/peerj.215openalex-snapshot
Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/eap.2060openalex-snapshot
Carryover effects of temperature and pCO 2 across multiple Olympia oyster populations
inferred← citeshttps://doi.org/10.1007/s10126-015-9674-4openalex-snapshot
Inheritance and Variation of Genomic DNA Methylation in Diploid and Triploid Pacific Oyster (Crassostrea gigas)
inferred← citeshttps://doi.org/10.1007/s10126-024-10409-6openalex-snapshot
DNA Methylation of Somatic Tissues in Oysters is Influenced by Sex and Heredity
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20621-3openalex-snapshot
Genetics & Epigenetics in Life History and Reproduction: Oysters
inferred← citeshttps://doi.org/10.1016/b978-0-444-62710-0.00009-2openalex-snapshot
Scallop Genetics and Genomics
inferred← citeshttps://doi.org/10.1016/j.gene.2019.144166openalex-snapshot
Epigenetic inheritance and intergenerational effects in mollusks
inferred← citeshttps://doi.org/10.1101/2022.02.22.481396openalex-snapshot
Intergenerational transfer and sex differences of DNA methylation patterns in the Pacific oyster ( Crassostrea gigas )
inferred← citeshttps://doi.org/10.1101/2022.03.07.483338openalex-snapshot
Differential DNA methylation in Pacific oyster reproductive tissue in response to ocean acidification
inferred← citeshttps://doi.org/10.1101/616375openalex-snapshot
Carryover effects of temperature and pCO 2 across multiple Olympia oyster populations
inferred← citeshttps://doi.org/10.1111/1365-2656.13645openalex-snapshot
Differential DNA methylation across environments has no effect on gene expression in the eastern oyster
inferred← citeshttps://doi.org/10.1111/jeb.13130openalex-snapshot
Epigenetics in natural animal populations
inferred← citeshttps://doi.org/10.1111/mec.13414openalex-snapshot
Germline DNA methylation in reef corals: patterns and potential roles in response to environmental change
inferred← citeshttps://doi.org/10.1186/s12864-022-08781-5openalex-snapshot
Differential DNA methylation in Pacific oyster reproductive tissue in response to ocean acidification
inferred← citeshttps://doi.org/10.17760/d20439247openalex-snapshot
DNA methylation as an intra- and transgenerational mediator of phenotypic response
inferred← citeshttps://doi.org/10.3390/genes10050356openalex-snapshot
Temporal Dynamics of DNA Methylation Patterns in Response to Rearing Juvenile Steelhead (Oncorhynchus mykiss) in a Hatchery versus Simulated Stream Environment
inferred← citeshttps://doi.org/10.70675/52a9947bz6a55z4309za032zde3481dc6b5dopenalex-snapshot
Effets de l’exposition parentale au diuron sur le méthylome et transcriptome de l’huître du Pacifique Crassostrea gigas
inferred← citeshttps://doi.org/10.70675/f75dd776za1b4z42eazaac7z5add9f744e3dopenalex-snapshot
Etude de la réponse environnementale et transgénérationnelle chez l’huitre creuse Crassostrea gigas : focus sur les mécanismes épigénétiques
inferred← citeshttps://doi.org/10.7717/peerj.4147openalex-snapshot
Epigenetic considerations in aquaculture
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