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Speciation in Heliconius Butterflies: Minimal Contact Followed by Millions of Generations of Hybridisation

https://doi.org/10.1101/015800
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.996openalex-snapshot
Divergent warning patterns contribute to assortative mating between incipient Heliconius species
inferredcites →https://doi.org/10.1016/0304-4149(82)90011-4openalex-snapshot
The coalescent
inferredcites →https://doi.org/10.1016/j.celrep.2013.09.042openalex-snapshot
Hybridization Reveals the Evolving Genomic Architecture of Speciation
inferredcites →https://doi.org/10.1016/j.tpb.2007.11.001openalex-snapshot
The distribution of the coalescence time and the number of pairwise nucleotide differences in the “isolation with migration” model
inferredcites →https://doi.org/10.1038/35077075openalex-snapshot
Reproductive isolation caused by colour pattern mimicry
inferredcites →https://doi.org/10.1038/hdy.1986.31openalex-snapshot
Hybrid zones of Heliconius butterflies in Panama and the stability and movement of warning colour clines
inferredcites →https://doi.org/10.1038/hdy.1997.189openalex-snapshot
The maintenance of species differences across a Heliconius hybrid zone
inferredcites →https://doi.org/10.1038/nature04325openalex-snapshot
Sympatric speciation in Nicaraguan crater lake cichlid fish
inferredcites →https://doi.org/10.1038/nature11041openalex-snapshot
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
inferredcites →https://doi.org/10.1038/nature11584openalex-snapshot
The genomic landscape of species divergence in Ficedula flycatchers
inferredcites →https://doi.org/10.1038/nature14181openalex-snapshot
Evolution of Darwin’s finches and their beaks revealed by genome sequencing
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1046/j.1365-2311.1997.00067.xopenalex-snapshot
Host plant adaptation has not played a role in the recent speciation of Heliconius himera and Heliconius erato
inferredcites →https://doi.org/10.1046/j.1365-2311.2002.00434.xopenalex-snapshot
Patterns of pollen feeding and habitat preference among Heliconius species
inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot
The genic view of the process of speciation
inferredcites →https://doi.org/10.1073/pnas.0611164104openalex-snapshot
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
inferredcites →https://doi.org/10.1073/pnas.0911572107openalex-snapshot
Dissecting comimetic radiations in Heliconius reveals divergent histories of convergent butterflies
inferredcites →https://doi.org/10.1086/282457openalex-snapshot
Sympatric Speciation
inferredcites →https://doi.org/10.1086/338370openalex-snapshot
Speciation by Natural and Sexual Selection: Models and Experiments
inferredcites →https://doi.org/10.1086/383619openalex-snapshot
Sympatric Speciation by Sexual Selection: A Critical Reevaluation
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
inferredcites →https://doi.org/10.1093/genetics/161.4.1517openalex-snapshot
Hybrid Sterility, Haldane's Rule and Speciation in Heliconius cydno and H. melpomene
inferredcites →https://doi.org/10.1093/molbev/msp296openalex-snapshot
Isolation with Migration Models for More Than Two Populations
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mss084openalex-snapshot
Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty
inferredcites →https://doi.org/10.1093/molbev/mss118openalex-snapshot
Maximum Likelihood Implementation of an Isolation-with-Migration Model with Three Species for Testing Speciation with Gene Flow
inferredcites →https://doi.org/10.1093/molbev/msu302openalex-snapshot
Estimation of the Spontaneous Mutation Rate in Heliconius melpomene
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/sysbio/syv007openalex-snapshot
Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies
inferredcites →https://doi.org/10.1098/rspb.2010.1493openalex-snapshot
Pervasive genetic associations between traits causing reproductive isolation inHeliconiusbutterflies
inferredcites →https://doi.org/10.1098/rspb.2012.1968openalex-snapshot
Disruptive ecological selection on a mating cue
inferredcites →https://doi.org/10.1101/gr.111120.110openalex-snapshot
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
inferredcites →https://doi.org/10.1101/gr.130922.111openalex-snapshot
Genome sequencing reveals complex speciation in the Drosophila simulans clade
inferredcites →https://doi.org/10.1101/gr.159426.113openalex-snapshot
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00223.xopenalex-snapshot
ACCUMULATION OF DOBZHANSKY-MULLER INCOMPATIBILITIES WITHIN A SPATIALLY STRUCTURED POPULATION
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb01537.xopenalex-snapshot
ACCUMULATING POSTZYGOTIC ISOLATION GENES IN PARAPATRY: A NEW TWIST ON CHROMOSOMAL SPECIATION
inferredcites →https://doi.org/10.1111/j.1095-8312.2011.01814.xopenalex-snapshot
Testing historical explanations for gradients in species richness in heliconiine butterflies of tropical America
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04494.xopenalex-snapshot
Rejecting strictly allopatric speciation on a continental island: prolonged postdivergence gene flow between Taiwan (Leucodioptron taewanus, Passeriformes Timaliidae) and Chinese (L. canorum canorum) hwameis
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05048.xopenalex-snapshot
Interpreting the estimated timing of migration events between hybridizing species
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05247.xopenalex-snapshot
On the nonidentifiability of migration time estimates in isolation with migration models
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05343.xopenalex-snapshot
Isolation and gene flow: inferring the speciation history of European house mice
inferredcites →https://doi.org/10.1111/j.1420-9101.2004.00675.xopenalex-snapshot
Mimicry and the evolution of premating isolation in Heliconius melpomene Linnaeus
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01816.xopenalex-snapshot
Space, sympatry and speciation
inferredcites →https://doi.org/10.1111/j.1558-5646.1982.tb05034.xopenalex-snapshot
RAPID ORIGIN OF SEXUAL ISOLATION AND CHARACTER DIVERGENCE IN A CLINE
inferredcites →https://doi.org/10.1111/j.1558-5646.1982.tb05040.xopenalex-snapshot
PLEIOTROPY AND PARAPATRIC SPECIATION
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00662.xopenalex-snapshot
LEARNING ABOUT MODES OF SPECIATION BY COMPUTATIONAL APPROACHES
inferredcites →https://doi.org/10.1111/jeb.12006openalex-snapshot
Methodological challenges to realizing the potential of hybridization research
inferredcites →https://doi.org/10.1111/jeb.12194openalex-snapshot
Ecological and genetic factors influencing the transition between host‐use strategies in sympatric Heliconius butterflies
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot
Extensive introgression in a malaria vector species complex revealed by phylogenomics
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102209-144621openalex-snapshot
Approximate Bayesian Computation in Evolution and Ecology
inferredcites →https://doi.org/10.1186/1471-2105-11-116openalex-snapshot
ABCtoolbox: a versatile toolkit for approximate Bayesian computations
inferredcites →https://doi.org/10.1186/1471-2105-7-446openalex-snapshot
CpGcluster: a distance-based algorithm for CpG-island detection
inferredcites →https://doi.org/10.1186/1471-2148-7-28openalex-snapshot
Natural hybridization in heliconiine butterflies: the species boundary as a continuum
inferredcites →https://doi.org/10.1186/1471-2148-8-132openalex-snapshot
Gene flow and the genealogical history of Heliconius heurippa
inferredcites →https://doi.org/10.1186/1741-7007-4-11openalex-snapshot
Polyphyly and gene flow between non-sibling Heliconius species
inferredcites →https://doi.org/10.1371/journal.pgen.1000550openalex-snapshot
The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1002752openalex-snapshot
Adaptive Introgression across Species Boundaries in Heliconius Butterflies
inferredcites →https://doi.org/10.1515/9780691187051openalex-snapshot
Fitness Landscapes and the Origin of Species (MPB-41)
inferredcites →https://doi.org/10.1534/genetics.103.024182openalex-snapshot
Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.109.109058openalex-snapshot
Bayesian Computation and Model Selection Without Likelihoods
inferredcites →https://doi.org/10.1534/genetics.109.110528openalex-snapshot
Estimating Divergence Parameters With Small Samples From a Large Number of Loci
inferredcites →https://doi.org/10.1534/genetics.111.129569openalex-snapshot
A General Method for Calculating Likelihoods Under the Coalescent Process
inferredcites →https://doi.org/10.1534/genetics.111.137513openalex-snapshot
The Limits to Parapatric Speciation: Dobzhansky–Muller Incompatibilities in a Continent–Island Model
inferredcites →https://doi.org/10.1534/genetics.114.162396openalex-snapshot
Neandertal Admixture in Eurasia Confirmed by Maximum-Likelihood Analysis of Three Genomes
inferredcites →https://doi.org/10.1641/b580610openalex-snapshot
Ecological Speciation in Mimetic Butterflies
inferredcites →https://doi.org/10.2307/3078919openalex-snapshot
Speciation by Natural and Sexual Selection: Models and Experiments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/evl3.12openalex-snapshot
No evidence for maintenance of a sympatricHeliconiusspecies barrier by chromosomal inversions
inferred← citeshttps://doi.org/10.1093/molbev/msad178openalex-snapshot
Inferring the Direction of Introgression Using Genomic Sequence Data
inferred← citeshttps://doi.org/10.1093/sysbio/syy004openalex-snapshot
Phenotypic and Genetic Structure Support Gene Flow Generating Gene Tree Discordances in an Amazonian Floodplain Endemic Species
inferred← citeshttps://doi.org/10.1101/016469openalex-snapshot
Efficient strategies for calculating blockwise likelihoods under the coalescent
inferred← citeshttps://doi.org/10.1101/083931openalex-snapshot
Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies
inferred← citeshttps://doi.org/10.1101/2020.04.09.034470openalex-snapshot
Selection and gene flow define polygenic barriers between incipient butterfly species
inferred← citeshttps://doi.org/10.1101/2022.04.14.488334openalex-snapshot
A butterfly pan-genome reveals a large amount of structural variation underlies the evolution of chromatin accessibility
inferred← citeshttps://doi.org/10.1101/2024.11.29.625973openalex-snapshot
Untangling the contribution of adaptive versus non-adaptive processes in the evolution of reproductive isolation between Coenonympha butterflies
inferred← citeshttps://doi.org/10.1101/gr.276839.122openalex-snapshot
A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility
inferred← citeshttps://doi.org/10.1111/1755-0998.13944openalex-snapshot
RIDGE , a tool tailored to detect gene flow barriers across species pairs
inferred← citeshttps://doi.org/10.1111/evo.12789openalex-snapshot
Beyond magic traits: Multimodal mating cues inHeliconiusbutterflies
inferred← citeshttps://doi.org/10.1186/s12859-017-2002-4openalex-snapshot
Gene flow analysis method, the D-statistic, is robust in a wide parameter space
inferred← citeshttps://doi.org/10.1371/journal.pbio.2006288openalex-snapshot
Recombination rate variation shapes barriers to introgression across butterfly genomes
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000597openalex-snapshot
Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007358openalex-snapshot
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
inferred← citeshttps://doi.org/10.1534/genetics.115.183814openalex-snapshot
Efficient Strategies for Calculating Blockwise Likelihoods Under the Coalescent
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