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A general theory of individuated multicellularity

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ar.a.10134openalex-snapshot

Adult stem cells

inferredcites →https://doi.org/10.1002/bies.200800214openalex-snapshot

The origin of Metazoa: a transition from temporal to spatial cell differentiation

inferredcites →https://doi.org/10.1002/bies.201100031openalex-snapshot

The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post‐Darwinian biology?

inferredcites →https://doi.org/10.1002/bies.20197openalex-snapshot

A twelve-step program for evolving multicellularity and a division of labor

inferredcites →https://doi.org/10.1002/dvdy.22233openalex-snapshot

Cell fate specification in the C. elegans embryo

inferredcites →https://doi.org/10.1007/bf02870987openalex-snapshot

Miscible Fluids in Microgravity (MFMG): A zero-upmass investigation on the International Space Station

inferredcites →https://doi.org/10.1007/s00425-013-1909-xopenalex-snapshot

Transcriptome analyses of Arabidopsis thaliana seedlings grown in space: implications for gravity-responsive genes

inferredcites →https://doi.org/10.1007/s004380050490openalex-snapshot

A Darwinian theory for the origin of cellular differentiation

inferredcites →https://doi.org/10.1007/s11229-006-9025-0openalex-snapshot

Emergence: Core ideas and issues

inferredcites →https://doi.org/10.1007/s12064-012-0162-3openalex-snapshot

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

inferredcites →https://doi.org/10.1016/0300-9629(82)90260-2openalex-snapshot

Supercooling and winter survival in terrestrial arthropods

inferredcites →https://doi.org/10.1016/0303-2647(74)90031-8openalex-snapshot

Autopoiesis: The organization of living systems, its characterization and a model

inferredcites →https://doi.org/10.1016/j.atg.2013.06.001openalex-snapshot

Maternal regulation of offspring development in mammals is an ancient adaptation tied to lactation

inferredcites →https://doi.org/10.1016/j.cell.2011.09.057openalex-snapshot

Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

inferredcites →https://doi.org/10.1016/j.cell.2012.04.029openalex-snapshot

Comparative Epigenomic Annotation of Regulatory DNA

inferredcites →https://doi.org/10.1016/j.cell.2013.09.046openalex-snapshot

Generation and Dynamics of an Endogenous, Self-Generated Signaling Gradient across a Migrating Tissue

inferredcites →https://doi.org/10.1016/j.gde.2011.01.022openalex-snapshot

Chromatin higher-order structures and gene regulation

inferredcites →https://doi.org/10.1016/j.pbiomolbio.2012.04.003openalex-snapshot

What makes the cell differentiate?

inferredcites →https://doi.org/10.1016/j.plrev.2006.07.003openalex-snapshot

Self-organization vs. self-ordering events in life-origin models

inferredcites →https://doi.org/10.1016/s0092-8674(02)00655-4openalex-snapshot

A Unified Theory of Gene Expression

inferredcites →https://doi.org/10.1016/s0168-9525(03)00203-8openalex-snapshot

Scaling laws in the functional content of genomes

inferredcites →https://doi.org/10.1023/a:1004563122154openalex-snapshot

Making Sense of Emergence

inferredcites →https://doi.org/10.1038/459927aopenalex-snapshot

Unlocking the secrets of the genome

inferredcites →https://doi.org/10.1038/7331openalex-snapshot

Gene expression in space

inferredcites →https://doi.org/10.1038/nature05916openalex-snapshot

Nuclear organization of the genome and the potential for gene regulation

inferredcites →https://doi.org/10.1038/nature06519openalex-snapshot

The adaptive significance of temperature-dependent sex determination in a reptile

inferredcites →https://doi.org/10.1038/nature08119openalex-snapshot

A tissue-scale gradient of hydrogen peroxide mediates rapid wound detection in zebrafish

inferredcites →https://doi.org/10.1038/nature09990openalex-snapshot

A cis-regulatory map of the Drosophila genome

inferredcites →https://doi.org/10.1038/nature10093openalex-snapshot

Royalactin induces queen differentiation in honeybees

inferredcites →https://doi.org/10.1038/nature11233openalex-snapshot

Landscape of transcription in human cells

inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot

An integrated encyclopedia of DNA elements in the human genome

inferredcites →https://doi.org/10.1038/nature12635openalex-snapshot

Directional tissue migration through a self-generated chemokine gradient

inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

inferredcites →https://doi.org/10.1038/nbt.2596openalex-snapshot

Uniform, optimal signal processing of mapped deep-sequencing data

inferredcites →https://doi.org/10.1038/nm0898-901openalex-snapshot

Growing tissues in microgravity

inferredcites →https://doi.org/10.1038/nrg933openalex-snapshot

Conrad Hal Waddington: the last Renaissance biologist?

inferredcites →https://doi.org/10.1038/nrm3064openalex-snapshot

Asymmetric cell division in land plants and algae: the driving force for differentiation

inferredcites →https://doi.org/10.1038/nrm3543openalex-snapshot

Leveling Waddington: the emergence of direct programming and the loss of cell fate hierarchies

inferredcites →https://doi.org/10.1038/nrm3620openalex-snapshot

Role of the extracellular matrix in regulating stem cell fate

inferredcites →https://doi.org/10.1073/pnas.1322005111openalex-snapshot

Testing Turing’s theory of morphogenesis in chemical cells

inferredcites →https://doi.org/10.1073/pnas.141244998openalex-snapshot

Genome-wide gene expression profiles of the developing mouse hippocampus

inferredcites →https://doi.org/10.1073/pnas.44.7.712openalex-snapshot

EPIGENETIC CONTROL SYSTEMS

inferredcites →https://doi.org/10.1074/mcp.m111.015941openalex-snapshot

Quantitative Assessment of Chromatin Immunoprecipitation Grade Antibodies Directed against Histone Modifications Reveals Patterns of Co-occurring Marks on Histone Protein Molecules

inferredcites →https://doi.org/10.1093/bioinformatics/btl117openalex-snapshot

Pvclust: an R package for assessing the uncertainty in hierarchical clustering

inferredcites →https://doi.org/10.1093/biomet/10.4.507openalex-snapshot

FREQUENCY DISTRIBUTION OF THE VALUES OF THE CORRELATION COEFFIENTS IN SAMPLES FROM AN INDEFINITELY LARGE POPU;ATION

inferredcites →https://doi.org/10.1093/nar/gkh103openalex-snapshot

The UCSC Table Browser data retrieval tool

inferredcites →https://doi.org/10.1093/nar/gkm964openalex-snapshot

DBD––taxonomically broad transcription factor predictions: new content and functionality

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025819openalex-snapshot

A molecular phylogeny for aplocheiloid fishes (Atherinomorpha, Cyprinodontiformes): the role of vicariance and the origins of annualism

inferredcites →https://doi.org/10.1098/rstb.1952.0012openalex-snapshot

The chemical basis of morphogenesis

inferredcites →https://doi.org/10.1101/gad.1787609openalex-snapshot

An operational definition of epigenetics: Figure 1.

inferredcites →https://doi.org/10.1111/j.1469-8137.2006.01724.xopenalex-snapshot

Modulation of reactive oxygen species activities and H2O2 accumulation during compatible and incompatible tomato–root‐knot nematode interactions

inferredcites →https://doi.org/10.1111/j.1525-142x.2008.00231.xopenalex-snapshot

Six major steps in animal evolution: are we derived sponge larvae?

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00541.xopenalex-snapshot

ON THE EVOLUTION OF DIFFERENTIATED MULTICELLULARITY

inferredcites →https://doi.org/10.1126/science.1066609openalex-snapshot

Plants Compared to Animals: The Broadest Comparative Study of Development

inferredcites →https://doi.org/10.1126/science.1147888openalex-snapshot

Stochasticity and Cell Fate

inferredcites →https://doi.org/10.1126/science.1191078openalex-snapshot

Molecular Signals of Epigenetic States

inferredcites →https://doi.org/10.1126/science.286.5439.481openalex-snapshot

Epigenetics: Regulation Through Repression

inferredcites →https://doi.org/10.1126/science.286.5447.2179openalex-snapshot

Microarray Analysis of Drosophila Development During Metamorphosis

inferredcites →https://doi.org/10.1146/annurev-arplant-042811-105550openalex-snapshot

Seed Germination and Vigor

inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.102403.114735openalex-snapshot

The Evolution of Multicellularity: A Minor Major Transition?

inferredcites →https://doi.org/10.1186/1029-242x-2013-203openalex-snapshot

Comparison of hierarchical cluster analysis methods by cophenetic correlation

inferredcites →https://doi.org/10.1186/gb-2010-11-3-204openalex-snapshot

The yin and yang of chromatin spatial organization

inferredcites →https://doi.org/10.1186/gb-2012-13-8-418openalex-snapshot

An encyclopedia of mouse DNA elements (Mouse ENCODE)

inferredcites →https://doi.org/10.1214/aos/1013699998openalex-snapshot

The control of the false discovery rate in multiple testing under dependency

inferredcites →https://doi.org/10.1242/dev.124.10.1851openalex-snapshot

The hardwiring of development: organization and function of genomic regulatory systems

inferredcites →https://doi.org/10.1371/journal.pbio.0060182openalex-snapshot

Spinal Cord Injury Reveals Multilineage Differentiation of Ependymal Cells

inferredcites →https://doi.org/10.1371/journal.pcbi.1000805openalex-snapshot

Rapid Transition towards the Division of Labor via Evolution of Developmental Plasticity

inferredcites →https://doi.org/10.1371/journal.pcbi.1003168openalex-snapshot

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks

inferredcites →https://doi.org/10.1371/journal.pone.0097703openalex-snapshot

Global Gene Expression Shift during the Transition from Early Neural Development to Late Neuronal Differentiation in Drosophila melanogaster

inferredcites →https://doi.org/10.1387/ijdb.052077scopenalex-snapshot

Effects of microgravity on cell cytoskeleton and embryogenesis

inferredcites →https://doi.org/10.1641/b570805openalex-snapshot

Dedifferentiation: A New Approach in Stem Cell Research

inferredcites →https://doi.org/10.3390/info5030404openalex-snapshot

Complexity and Dynamical Depth

inferredcites →https://doi.org/10.4161/cc.7.9.5791openalex-snapshot

Epigenetic inheritance of cell differentiation status

inferredcites →https://doi.org/10.5962/bhl.title.6821openalex-snapshot

The evolution of the metazoa

inferredcites →https://doi.org/10.7554/elife.04070openalex-snapshot

The rosetteless gene controls development in the choanoflagellate S. rosetta

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-319-27583-3_6openalex-snapshot

Mathematical Models in Stem Cell Differentiation and Fate Predictability

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