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Climatic niches in phylogenetic comparative studies: a review of challenges and approaches

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Resource Selection by Animals : Statistical design and analysis for field studies
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Markov Models in Molecular Evolution
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Information Theory and an Extension of the Maximum Likelihood Principle
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Information Theory and an Extension of the Maximum Likelihood Principle
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
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RECONSTRUCTING ANCESTRAL TRAIT VALUES USING SQUARED-CHANGE PARSIMONY: PLASMA OSMOLARITY AT THE ORIGIN OF AMNIOTES
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Evolution of Protein Molecules
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Model selection in ecology and evolution
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Bayesian inference of character evolution
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Integrating GIS-based environmental data into evolutionary biology
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Systematics and morphological evolution within the moss family Bryaceae: A comparison between parsimony and Bayesian methods for reconstruction of ancestral character states
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Inclusion of facilitation into ecological theory
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Reconstructing ancestral character states: a critical reappraisal
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Predictive habitat distribution models in ecology
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Inferring the historical patterns of biological evolution
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The delayed rise of present-day mammals
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Phylogenetic biome conservatism on a global scale
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Consequences of climate change on the tree of life in Europe
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Multiple routes to mammalian diversity
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The global diversity of birds in space and time
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Is your phylogeny informative? Measuring the power of comparative methods
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Phylogeny estimation: traditional and Bayesian approaches
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Ecological niche differentiation in the Aphelocoma jays: a phylogenetic perspective
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Projected distributions of novel and disappearing climates by 2100 AD
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Niches and distributional areas: Concepts, methods, and assumptions
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Reconstruction of the climate envelopes of salamanders and their evolution through time
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Evolutionary lag times and recent origin of the biota of an ancient desert (Atacama–Sechura)
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A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
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Bayesian Estimation of Ancestral Character States on Phylogenies
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Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
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Ancestral State Reconstruction of Body Size in the Caniformia (Carnivora, Mammalia): The Effects of Incorporating Data from the Fossil Record
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Intraspecific Variability and Timing in Ancestral Ecology Reconstruction: A Test Case from the Cape Flora
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Phyloclimatic Modeling: Combining Phylogenetics and Bioclimatic Modeling
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Statistical Methods in Molecular Evolution
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Phylogenetic Signal, Evolutionary Process, and Rate
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The Maximum Likelihood Approach to Reconstructing Ancestral Character States of Discrete Characters on Phylogenies
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Estimation of Ancestral States of Continuous Characters: A Computer Simulation Study
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Phylogenies and the Comparative Method
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Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data
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Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
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Resolving the Paradox of Stasis: Models with Stabilizing Selection Explain Evolutionary Divergence on All Timescales
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Trait Evolution, Community Assembly, and the Phylogenetic Structure of Ecological Communities
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Niche Conservatism Drives Elevational Diversity Patterns in Appalachian Salamanders
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Seeing the Forest for the Trees: The Limitations of Phylogenies in Comparative Biology
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A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model
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Neutral Biogeography and the Evolution of Climatic Niches
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Tempo and Mode in Evolution
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APE: Analyses of Phylogenetics and Evolution in R language
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GEIGER: investigating evolutionary radiations
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AN ANALYSIS OF VARIABILITY IN NUMBER OF DIGITS IN AN INBRED STRAIN OF GUINEA PIGS
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Squared-Change Parsimony Reconstructions of Ancestral States for Continuous-Valued Characters on a Phylogenetic Tree
inferredcites →https://doi.org/10.1093/sysbio/syq011openalex-snapshot
Combining Historical Biogeography with Niche Modeling in the Caprifolium Clade of Lonicera (Caprifoliaceae, Dipsacales)
inferredcites →https://doi.org/10.1093/sysbio/sys034openalex-snapshot
Distribution Models and a Dated Phylogeny for Chilean Oxalis Species Reveal Occupation of New Habitats by Different Lineages, not Rapid Adaptive Radiation
inferredcites →https://doi.org/10.1093/sysbio/syt034openalex-snapshot
Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms
inferredcites →https://doi.org/10.1093/sysbio/syt066openalex-snapshot
Robust Regression and Posterior Predictive Simulation Increase Power to Detect Early Bursts of Trait Evolution
inferredcites →https://doi.org/10.1098/rsbl.2009.0688openalex-snapshot
Evolution of climate niches in European mammals?
inferredcites →https://doi.org/10.1098/rspb.2002.2224openalex-snapshot
Genetic and plastic responses of a northern mammal to climate change
inferredcites →https://doi.org/10.1098/rspb.2006.3488openalex-snapshot
Comparative analyses of the influence of developmental mode on phenotypic diversification rates in shorebirds
inferredcites →https://doi.org/10.1098/rspb.2009.1176openalex-snapshot
Life history influences rates of climatic niche evolution in flowering plants
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Diversity versus disparity and the radiation of modern cetaceans
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The phylogenetic regression
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Phylogenetic uncertainties and sensitivity analyses in comparative biology
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Correlated evolution and independent contrasts
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Comparative analyses for adaptive radiations
inferredcites →https://doi.org/10.1098/rstb.2005.1669openalex-snapshot
Using the quantitative genetic threshold model for inferences between and within species
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Looking forward through the past: identification of 50 priority research questions in palaeoecology
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Mutualist‐mediated effects on species' range limits across large geographic scales
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DIVERSITY AND NICHE EVOLUTION ALONG ARIDITY GRADIENTS IN NORTH AMERICAN LIZARDS (PHRYNOSOMATIDAE)
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ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS
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INDEPENDENT CONTRASTS SUCCEED WHERE ANCESTOR RECONSTRUCTION FAILS IN A KNOWN BACTERIOPHAGE PHYLOGENY
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TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
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INTEGRATING PHYLOGENETICS AND ENVIRONMENTAL NICHE MODELS TO EXPLORE SPECIATION MECHANISMS IN DENDROBATID FROGS
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CLIMATE AND LIFE-HISTORY EVOLUTION IN EVENING PRIMROSES (OENOTHERA, ONAGRACEAE): A PHYLOGENETIC COMPARATIVE ANALYSIS
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EVOLUTION OF THE REALIZED CLIMATIC NICHE IN THE GENUS ARABIDOPSIS (BRASSICACEAE)
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TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD
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Phylogenetic perspective on ecological niche evolution in american blackbirds (Family Icteridae)
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Evolution of the climatic niche in scaly tree ferns (Cyatheaceae, Polypodiopsida)
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No‐analog climates and shifting realized niches during the late quaternary: implications for 21st‐century predictions by species distribution models
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Reconstructing ancestral ecologies: challenges and possible solutions
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Phylogenetic comparative approaches for studying niche conservatism
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Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species
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Rejoinder to Wiens (2008): Phylogenetic niche conservatism, its occurrence and importance
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Commentary on Losos (2008): niche conservatism déjà vu
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Niche conservatism as an emerging principle in ecology and conservation biology
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Accelerated rates of climatic‐niche evolution underlie rapid species diversification
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Fossils provide better estimates of ancestral body size than do extant taxa in fishes
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Inferring evolutionary processes from phylogenies
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Phylogenetic niche conservatism: what are the underlying evolutionary and ecological causes?
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PHYLOGENETIC STUDIES OF COADAPTATION: PREFERRED TEMPERATURES VERSUS OPTIMAL PERFORMANCE TEMPERATURES OF LIZARDS
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TRANSLATING BETWEEN MICROEVOLUTIONARY PROCESS AND MACROEVOLUTIONARY PATTERNS: THE CORRELATION STRUCTURE OF INTERSPECIFIC DATA
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STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION
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LIKELIHOOD OF ANCESTOR STATES IN ADAPTIVE RADIATION
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LOSS AND RE-EVOLUTION OF COMPLEX LIFE CYCLES IN MARSUPIAL FROGS: DOES ANCESTRAL TRAIT RECONSTRUCTION MISLEAD?
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TESTING THE GENETIC CONSTRAINT HYPOTHESIS IN A PHYLOGENETIC CONTEXT: A SIMULATION STUDY
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DETECTION OF “PUNCTUATED EQUILIBRIUM” BY BAYESIAN ESTIMATION OF SPECIATION AND EXTINCTION RATES, ANCESTRAL CHARACTER STATES, AND RATES OF ANAGENETIC AND CLADOGENETIC EVOLUTION ON A MOLECULAR PHYLOGENY
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01025.xopenalex-snapshot
EARLY BURSTS OF BODY SIZE AND SHAPE EVOLUTION ARE RARE IN COMPARATIVE DATA
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ECOLOGICAL OPPORTUNITY AND THE RATE OF MORPHOLOGICAL EVOLUTION IN THE DIVERSIFICATION OF GREATER ANTILLEAN ANOLES
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A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES
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RECONSTRUCTING THE ORIGINS OF HIGH-ALPINE NICHES AND CUSHION LIFE FORM IN THE GENUS ANDROSACE S.L. (PRIMULACEAE)
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IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS
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MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN-UHLENBECK MODEL OF ADAPTIVE EVOLUTION
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INTEGRATING FOSSILS WITH MOLECULAR PHYLOGENIES IMPROVES INFERENCE OF TRAIT EVOLUTION
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Within‐taxon niche structure: niche conservatism, divergence and predicted effects of climate change
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Building megaphylogenies for macroecology: taking up the challenge
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Novel methods improve prediction of species’ distributions from occurrence data
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00132.xopenalex-snapshot
MOTMOT: models of trait macroevolution on trees
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/j.2041-210x.2012.00234.xopenalex-snapshot
Diversitree: comparative phylogenetic analyses of diversification in R
inferredcites →https://doi.org/10.1111/jbi.12028openalex-snapshot
Climatic niche evolution and species diversification in the C ape flora, S outh A frica
inferredcites →https://doi.org/10.1111/jbi.12121openalex-snapshot
Rapid lizard radiation lacking niche conservatism: ecological diversification within a complex landscape
inferredcites →https://doi.org/10.1111/nyas.12157openalex-snapshot
An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology
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Tempo and Mode of Evolutionary Radiation in Iguanian Lizards
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Rates of Molecular Evolution Are Linked to Life History in Flowering Plants
inferredcites →https://doi.org/10.1126/science.95.2470.451-aopenalex-snapshot
THE COLD SPRING HARBOR SYMPOSIUM ON QUANTITATIVE BIOLOGY
inferredcites →https://doi.org/10.1146/annurev.earth.24.1.433openalex-snapshot
THE QUALITY OF THE FOSSIL RECORD: Populations, Species, and Communities
inferredcites →https://doi.org/10.1146/annurev.ecolsys.26.1.269openalex-snapshot
The Quality of the Fossil Record: Populations, Species, and Communities
inferredcites →https://doi.org/10.1146/annurev.es.19.110188.002305openalex-snapshot
PHYLOGENIES AND QUANTITATIVE CHARACTERS
inferredcites →https://doi.org/10.1186/1471-2105-7-88openalex-snapshot
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
inferredcites →https://doi.org/10.1186/1471-2148-11-28openalex-snapshot
A dated phylogeny and collection records reveal repeated biome shifts in the African genus Coccinia(Cucurbitaceae)
inferredcites →https://doi.org/10.1186/1471-2148-12-102openalex-snapshot
Bayesian models for comparative analysis integrating phylogenetic uncertainty
inferredcites →https://doi.org/10.1201/9780203165171openalex-snapshot
Morphology, Shape and Phylogeny
inferredcites →https://doi.org/10.1201/9780203165171-8openalex-snapshot
Quantitative characters, phylogenies, and morphometrics
inferredcites →https://doi.org/10.1201/9780203165171.ch12openalex-snapshot
Ancestral states and evolutionary rates of continuous characters
inferredcites →https://doi.org/10.1214/aos/1176344136openalex-snapshot
Estimating the Dimension of a Model
inferredcites →https://doi.org/10.1371/journal.pbio.0040373openalex-snapshot
Detecting Non-Brownian Trait Evolution in Adaptive Radiations
inferredcites →https://doi.org/10.1371/journal.pone.0022199openalex-snapshot
Species Delimitation in the Continental Forms of the Genus Epicrates (Serpentes, Boidae) Integrating Phylogenetics and Environmental Niche Models
inferredcites →https://doi.org/10.1371/journal.pone.0028554openalex-snapshot
Pleistocene Climate, Phylogeny, and Climate Envelope Models: An Integrative Approach to Better Understand Species' Response to Climate Change
inferredcites →https://doi.org/10.1371/journal.pone.0050358openalex-snapshot
Past Climate Change and Plant Evolution in Western North America: A Case Study in Rosaceae
inferredcites →https://doi.org/10.1371/journal.pone.0055629openalex-snapshot
Comparative Phyloclimatic Analysis and Evolution of Ecological Niches in the Scimitar Babblers (Aves: Timaliidae: Pomatorhinus)
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CLIMATE AND LIFE-HISTORY EVOLUTION IN EVENING PRIMROSES (OENOTHERA, ONAGRACEAE): A PHYLOGENETIC COMPARATIVE ANALYSIS
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Responses of plant populations and communities to environmental changes of the late Quaternary
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DISSIMILARITY ANALYSES OF LATE-QUATERNARY VEGETATION AND CLIMATE IN EASTERN NORTH AMERICA
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NICHE EVOLUTION AND ADAPTIVE RADIATION: TESTING THE ORDER OF TRAIT DIVERGENCE
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MAPPING THE FUNDAMENTAL NICHE: PHYSIOLOGY, CLIMATE, AND THE DISTRIBUTION OF A NOCTURNAL LIZARD
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Novel climates, no-analog communities, and ecological surprises
inferredcites →https://doi.org/10.1890/10-0751.1openalex-snapshot
Generalized functional responses for species distributions
inferredcites →https://doi.org/10.2307/1936632openalex-snapshot
The Measurement of Niche Overlap and Some Relatives
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An Introduction to Population Ecology.
inferredcites →https://doi.org/10.2307/2406616openalex-snapshot
Phylogenetic Analysis: Models and Estimation Procedures
inferredcites →https://doi.org/10.2307/2410878openalex-snapshot
Translating Between Microevolutionary Process and Macroevolutionary Patterns: The Correlation Structure of Interspecific Data
inferredcites →https://doi.org/10.2307/2992324openalex-snapshot
Squared-Change Parsimony Reconstructions of Ancestral States for Continuous-Valued Characters on a Phylogenetic Tree
inferredcites →https://doi.org/10.2307/3037993openalex-snapshot
Models in Paleobiology.
inferredcites →https://doi.org/10.2307/3473229openalex-snapshot
Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
inferredcites →https://doi.org/10.2307/3802723openalex-snapshot
Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach
inferredcites →https://doi.org/10.2307/3844737openalex-snapshot
Pereskia and the Origin of the Cactus Life-Form
inferredcites →https://doi.org/10.2307/4125319openalex-snapshot
Resolving the Paradox of Stasis: Models with Stabilizing Selection Explain Evolutionary Divergence on All Timescales
inferredcites →https://doi.org/10.2307/5247openalex-snapshot
Resource Selection by Animals: Statistical Design and Analysis for Field Studies
inferredcites →https://doi.org/10.5860/choice.35-2123openalex-snapshot
Amniote origins: completing the transition to land
inferredcites →https://doi.org/10.5860/choice.49-6266openalex-snapshot
Ecological niches and geographic distributions

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ajb2.16059openalex-snapshot
Evaluation of tropical–temperate transitions: An example of climatic characterization in the Asian Palmate group of Araliaceae
inferred← citeshttps://doi.org/10.1002/ece3.6091openalex-snapshot
The combined role of dispersal and niche evolution in the diversification of Neotropical lizards
inferred← citeshttps://doi.org/10.1002/ece3.6729openalex-snapshot
A tale of two seasons: The link between seasonal migration and climatic niches in passerine birds
inferred← citeshttps://doi.org/10.1007/s13127-026-00713-5openalex-snapshot
Climatic niche divergence in the diversification of long-haired mice of the subgenus Abrothrix (Cricetidae: Abrotrichini)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107178openalex-snapshot
Adaptive radiation and speciation in Rhipicephalus ticks: A medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients
inferred← citeshttps://doi.org/10.1101/2021.10.20.465102openalex-snapshot
Tropical-temperate dichotomy falls apart in the Asian Palmate Group of Araliaceae
inferred← citeshttps://doi.org/10.1111/jbi.70317openalex-snapshot
Climatic Niche Differentiation Accompanied the Radiation of Leaf‐Eared Mice in the Phyllotis darwini Species Group (Sigmodontinae, Cricetidae)
inferred← citeshttps://doi.org/10.22201/ib.20078706e.2025.96.5347openalex-snapshot
Patrones de riqueza de especies y conservadurismo filogenético del nicho ecológico en la Zona de Transición Mexicana: evidencia y herramientas para su estudio
inferred← citeshttps://doi.org/10.5204/thesis.eprints.197697openalex-snapshot
Evolution of marsupial biodiversity
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