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Hi-Cpipe: a pipeline for high-throughput chromosome capture

https://doi.org/10.1101/020636

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/bts521openalex-snapshot

HiTC: exploration of high-throughput ‘C’ experiments

inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-4939-8766-5_16openalex-snapshot

Practical Analysis of Hi-C Data: Generating A/B Compartment Profiles

inferred← citeshttps://doi.org/10.1007/s40484-017-0113-6openalex-snapshot

Computational tools for Hi‐C data analysis

inferred← citeshttps://doi.org/10.1101/214403openalex-snapshot

Binless normalization of Hi-C data provides significant interaction and difference detection independently of resolution

inferred← citeshttps://doi.org/10.1186/s12575-019-0094-0openalex-snapshot

An Overview of Methods for Reconstructing 3-D Chromosome and Genome Structures from Hi-C Data

inferred← citeshttps://doi.org/10.1186/s12859-020-03689-xopenalex-snapshot

Network-based method for regions with statistically frequent interchromosomal interactions at single-cell resolution

inferred← citeshttps://doi.org/10.1186/s12864-016-3387-6openalex-snapshot

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

inferred← citeshttps://doi.org/10.1186/s13040-022-00305-xopenalex-snapshot

ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data

inferred← citeshttps://doi.org/10.1186/s13059-015-0745-7openalex-snapshot

Analysis methods for studying the 3D architecture of the genome

inferred← citeshttps://doi.org/10.1186/s13059-015-0831-xopenalex-snapshot

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

inferred← citeshttps://doi.org/10.1186/s13059-020-02215-9openalex-snapshot

FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data

inferred← citeshttps://doi.org/10.32469/10355/70076openalex-snapshot

Data mining and machine learning methods for chromosome conformation data analysis

inferred← citeshttps://doi.org/10.3390/genes8090223openalex-snapshot

Advances in Genomic Profiling and Analysis of 3D Chromatin Structure and Interaction

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