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HTS-IBIS: fast and accurate inference of binding site motifs from HT-SELEX data

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jcb.22077openalex-snapshot

Genomic location analysis by ChIP‐Seq

inferredcites →https://doi.org/10.1016/j.cell.2011.10.053openalex-snapshot

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

inferredcites →https://doi.org/10.1016/j.cell.2012.12.009openalex-snapshot

DNA-Binding Specificities of Human Transcription Factors

inferredcites →https://doi.org/10.1038/nbt1246openalex-snapshot

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

inferredcites →https://doi.org/10.1089/cmb.2012.0253openalex-snapshot

RAP: Accurate and Fast Motif Finding Based on Protein-Binding Microarray Data

inferredcites →https://doi.org/10.1093/nar/gkq992openalex-snapshot

UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions

inferredcites →https://doi.org/10.1093/nar/gku117openalex-snapshot

A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data

inferredcites →https://doi.org/10.1101/gr.100552.109openalex-snapshot

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

inferredcites →https://doi.org/10.1101/gr.136184.111openalex-snapshot

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

inferredcites →https://doi.org/10.1371/journal.pcbi.1000590openalex-snapshot

Inferring Binding Energies from Selected Binding Sites

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cels.2016.07.003openalex-snapshot

AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments

inferred← citeshttps://doi.org/10.1093/bioinformatics/btx191openalex-snapshot

BEESEM: estimation of binding energy models using HT-SELEX data

inferred← citeshttps://doi.org/10.1101/047357openalex-snapshot

AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1005638openalex-snapshot

Inherent limitations of probabilistic models for protein-DNA binding specificity

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