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Unearthing the microbial ecology of soil carbon cycling with DNA-SIP

https://doi.org/10.1101/022483
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Principles of Terrestrial Ecosystem Ecology
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Microbial Dynamics Associated with Multiphasic Decomposition of 14C-Labeled Cellulose in Soil
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Dissolved Organic Carbon in Terrestrial Ecosystems: Synthesis and a Model
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Integrating microbial ecology into ecosystem models: challenges and priorities
inferredcites →https://doi.org/10.1016/0038-0717(94)90184-8openalex-snapshot
Microbial utilization of 14C[U]glucose in soil is affected by the amount and timing of glucose additions
inferredcites →https://doi.org/10.1016/0169-5347(94)90266-6openalex-snapshot
Arctic and alpine biodiversity: patterns, causes and ecosystem consequences
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Monomers, Polymers and Composites from Renewable Resources
inferredcites →https://doi.org/10.1016/j.soilbio.2007.02.002openalex-snapshot
Microbial use of maize cellulose and sugarcane sucrose monitored by changes in the 13C/12C ratio
inferredcites →https://doi.org/10.1016/j.soilbio.2008.02.020openalex-snapshot
Microbial utilization and mineralization of [14C]glucose added in six orders of concentration to soil
inferredcites →https://doi.org/10.1016/j.soilbio.2009.11.016openalex-snapshot
Microbial communities and their relevance for ecosystem models: Decomposition as a case study
inferredcites →https://doi.org/10.1016/j.soilbio.2011.03.012openalex-snapshot
The under-recognized dominance of Verrucomicrobia in soil bacterial communities
inferredcites →https://doi.org/10.1016/j.tim.2010.02.002openalex-snapshot
When metagenomics meets stable-isotope probing: progress and perspectives
inferredcites →https://doi.org/10.1016/j.tree.2006.04.003openalex-snapshot
A molecular dawn for biogeochemistry
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Fungal succession — unravelling the unpredictable
inferredcites →https://doi.org/10.1021/sc4000175openalex-snapshot
Plant Maturity Effects on the Physicochemical Properties and Dilute Acid Hydrolysis of Switchgrass (Panicum virgatum, L.) Hemicelluloses
inferredcites →https://doi.org/10.1038/35001054openalex-snapshot
Stable-isotope probing as a tool in microbial ecology
inferredcites →https://doi.org/10.1038/ismej.2008.82openalex-snapshot
Evidence for the functional significance of diazotroph community structure in soil
inferredcites →https://doi.org/10.1038/ismej.2012.160openalex-snapshot
Phylogenetic conservatism of functional traits in microorganisms
inferredcites →https://doi.org/10.1038/nclimate1951openalex-snapshot
Global soil carbon projections are improved by modelling microbial processes
inferredcites →https://doi.org/10.1038/ngeo846openalex-snapshot
Soil-carbon response to warming dependent on microbial physiology
inferredcites →https://doi.org/10.1046/j.1351-0754.2003.0556.xopenalex-snapshot
Microbial diversity and soil functions
inferredcites →https://doi.org/10.1046/j.1442-9993.2001.01070.xopenalex-snapshot
A new method for non-parametric multivariate analysis of variance
inferredcites →https://doi.org/10.1046/j.1462-2920.2003.00535.xopenalex-snapshot
Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil
inferredcites →https://doi.org/10.1073/pnas.1502956112openalex-snapshot
Biotic interactions mediate soil microbial feedbacks to climate change
inferredcites →https://doi.org/10.1086/303378openalex-snapshot
Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees
inferredcites →https://doi.org/10.1111/1758-2229.12243openalex-snapshot
Ultra‐high‐sensitivity stable‐isotope probing of rRNA by high‐throughput sequencing of isopycnic centrifugation gradients
inferredcites →https://doi.org/10.1111/ele.12206openalex-snapshot
Climate change alters ecological strategies of soil bacteria
inferredcites →https://doi.org/10.1111/j.1365-2389.1996.tb01386.xopenalex-snapshot
Total carbon and nitrogen in the soils of the world
inferredcites →https://doi.org/10.1111/j.1365-2435.2008.01404.xopenalex-snapshot
Soil carbon stocks in experimental mesocosms are dependent on the rate of labile carbon, nitrogen and phosphorus inputs to soils
inferredcites →https://doi.org/10.1111/j.1469-8137.1951.tb05179.xopenalex-snapshot
ECOLOGICAL GROUPS OF SOIL FUNGI: A SURVEY OF SUBSTRATE RELATIONSHIPS
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00386.xopenalex-snapshot
Testing the functional significance of microbial composition in natural communities
inferredcites →https://doi.org/10.1128/aem.00400-06openalex-snapshot
Identification of Bacterial Micropredators Distinctively Active in a Soil Microbial Food Web
inferredcites →https://doi.org/10.1128/aem.02609-06openalex-snapshot
Stable Isotope Probing with 15 N Achieved by Disentangling the Effects of Genome G+C Content and Isotope Enrichment on DNA Density
inferredcites →https://doi.org/10.1128/aem.03305-12openalex-snapshot
Phylogenetic Distribution of Potential Cellulases in Bacteria
inferredcites →https://doi.org/10.1128/aem.46.4.881-888.1983openalex-snapshot
Interaction of Agromyces ramosus with Other Bacteria in Soil
inferredcites →https://doi.org/10.1128/aem.66.4.1328-1333.2000openalex-snapshot
rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria
inferredcites →https://doi.org/10.1128/aem.70.10.5778-5786.2004openalex-snapshot
Stable-Isotope Probing of Microorganisms Thriving at Thermodynamic Limits: Syntrophic Propionate Oxidation in Flooded Soil
inferredcites →https://doi.org/10.1128/aem.71.12.7858-7865.2005openalex-snapshot
Use of Field-Based Stable Isotope Probing To Identify Adapted Populations and Track Carbon Flow through a Phenol-Degrading Soil Microbial Community
inferredcites →https://doi.org/10.1128/aem.72.3.1719-1728.2006openalex-snapshot
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
inferredcites →https://doi.org/10.1128/mbio.01157-14openalex-snapshot
Multisubstrate Isotope Labeling and Metagenomic Analysis of Active Soil Bacterial Communities
inferredcites →https://doi.org/10.1128/mmbr.66.3.506-577.2002openalex-snapshot
Microbial Cellulose Utilization: Fundamentals and Biotechnology
inferredcites →https://doi.org/10.1146/annurev.earth.29.1.535openalex-snapshot
The Carbon Budget in Soils
inferredcites →https://doi.org/10.1146/annurev.en.33.010188.002223openalex-snapshot
Arthropod Regulation of Micro- and Mesobiota in Below-Ground Detrital Food Webs
inferredcites →https://doi.org/10.1146/annurev.mi.18.100164.001245openalex-snapshot
Biochemical Ecology of Soil Microorganisms
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1201/9780203904039.ch10openalex-snapshot
Fungal Communities, Succession, Enzymes, and Decomposition
inferredcites →https://doi.org/10.1371/journal.pcbi.1002743openalex-snapshot
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance
inferredcites →https://doi.org/10.1371/journal.pcbi.1003531openalex-snapshot
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
inferredcites →https://doi.org/10.1890/05-1839openalex-snapshot
TOWARD AN ECOLOGICAL CLASSIFICATION OF SOIL BACTERIA
inferredcites →https://doi.org/10.1890/08-0296.1openalex-snapshot
Testing the functional significance of microbial community composition
inferredcites →https://doi.org/10.2136/sssaj2004.0347openalex-snapshot
Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems
inferredcites →https://doi.org/10.3390/80200223openalex-snapshot
Biodiversity of Microbial Life: Foundation of Earth's Biosphere
inferredcites →https://doi.org/10.3852/mycologia.97.3.589openalex-snapshot
Colonization and succession of fungi during decomposition of Swida controversa leaf litter

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ecy.2887openalex-snapshot
Glucose triggers strong taxon‐specific responses in microbial growth and activity: insights from DNA and RNA qSIP
inferred← citeshttps://doi.org/10.1016/j.geoderma.2022.115846openalex-snapshot
Metagenomics reveals divergent functional profiles of soil carbon and nitrogen cycling under long-term addition of chemical and organic fertilizers in the black soil region
inferred← citeshttps://doi.org/10.1111/1462-2920.14366openalex-snapshot
Microbial community assembly differs across minerals in a rhizosphere microcosm
inferred← citeshttps://doi.org/10.1126/sciadv.aat1808openalex-snapshot
Biogeography of soil bacteria and archaea across France
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