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Ancient trans -acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response

https://doi.org/10.1101/024307
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway
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Plasma Membrane-Targeted PIN Proteins Drive Shoot Development in a Moss
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Directional Auxin Transport Mechanisms in Early Diverging Land Plants
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The auxin signalling network translates dynamic input into robust patterning at the shoot apex
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Summing up the noise in gene networks
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Phenotypic robustness conferred by apparently redundant transcriptional enhancers
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Selection on noise constrains variation in a eukaryotic promoter
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Network motifs: theory and experimental approaches
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The evolution of hierarchical gene regulatory networks
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The small interfering RNA production pathway is required for shoot meristem initiation in rice
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Cell-specific nitrogen responses mediate developmental plasticity
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Impact of gene expression noise on organismal fitness and the efficacy of natural selection
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Recruitment and remodeling of an ancient gene regulatory network during land plant evolution
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Both chloronemal and caulonemal cells expand by tip growth in the moss Physcomitrella patens
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Evolution of the ARF Gene Family in Land Plants: Old Domains, New Tricks
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Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis
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DICER-LIKE3 Activity in Physcomitrella patens DICER-LIKE4 Mutants Causes Severe Developmental Dysfunction and Sterility
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Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development
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Two small regulatory RNAs establish opposing fates of a developmental axis
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A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity
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Pattern formation via small RNA mobility
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Culturing the Moss Physcomitrella patens: Figure 1.
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Transformation of the Moss Physcomitrella patens Using Direct DNA Uptake by Protoplasts
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Small RNA-Regulated Networks and the Evolution of Novel Structures in Plants
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TheREDUCED LEAFLETGenes Encode Key Components of the trans-Acting Small Interfering RNA Pathway and Regulate Compound Leaf and Flower Development inLotus japonicus
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Antiquity of MicroRNAs and Their Targets in Land Plants
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Cell Cycle Progression in the Pericycle Is Not Sufficient for SOLITARY ROOT/IAA14-Mediated Lateral Root Initiation inArabidopsis thaliana
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Common Functions for Diverse Small RNAs of Land Plants
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Genome-Wide Analysis of mRNA Decay Rates and Their Determinants in Arabidopsis thaliana
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An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis
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miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth
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Evolution and Functional Diversification of MIRNA Genes
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Tissue-Autonomous Promotion of Palisade Cell Development by Phototropin 2 inArabidopsis
inferredcites →https://doi.org/10.1105/tpc.112.100222openalex-snapshot
Failure of the Tomato Trans-Acting Short Interfering RNA Program to Regulate AUXIN RESPONSE FACTOR3 and ARF4 Underlies the Wiry Leaf Syndrome
inferredcites →https://doi.org/10.1105/tpc.112.101840openalex-snapshot
Modeling Regulatory Networks to Understand Plant Development: Small Is Beautiful
inferredcites →https://doi.org/10.1105/tpc.112.103176openalex-snapshot
miR156 and miR390 Regulate tasiRNA Accumulation and Developmental Timing in Physcomitrella patens
inferredcites →https://doi.org/10.1105/tpc.113.114652openalex-snapshot
Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks
inferredcites →https://doi.org/10.1105/tpc.113.117788openalex-snapshot
TheTrans-Acting Short Interfering RNA3 Pathway and NO APICAL MERISTEM Antagonistically Regulate Leaf Margin Development and Lateral Organ Separation, as Revealed by Analysis of anargonaute7/lobed leaflet1Mutant inMedicago truncatula
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Identification of trans ‐acting siRNAs in moss and an RNA‐dependent RNA polymerase required for their biogenesis
inferredcites →https://doi.org/10.1111/j.1365-313x.2012.05001.xopenalex-snapshot
Rice RNA‐dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development
inferredcites →https://doi.org/10.1111/j.1438-8677.1998.tb00670.xopenalex-snapshot
Development, Genetics and Molecular Biology of Mosses
inferredcites →https://doi.org/10.1126/science.1105891openalex-snapshot
Noise in Gene Expression: Origins, Consequences, and Control
inferredcites →https://doi.org/10.1126/science.1142618openalex-snapshot
An Ancient Mechanism Controls the Development of Cells with a Rooting Function in Land Plants
inferredcites →https://doi.org/10.1126/science.1160631openalex-snapshot
Shadow Enhancers as a Source of Evolutionary Novelty
inferredcites →https://doi.org/10.1126/science.280.5365.895openalex-snapshot
The Biochemical Basis of an All-or-None Cell Fate Switch in Xenopus Oocytes
inferredcites →https://doi.org/10.1126/science.298.5594.824openalex-snapshot
Network Motifs: Simple Building Blocks of Complex Networks
inferredcites →https://doi.org/10.1126/science.aaa1738openalex-snapshot
MicroRNA control of protein expression noise
inferredcites →https://doi.org/10.1146/annurev-cellbio-100109-104113openalex-snapshot
Stochastic Mechanisms of Cell Fate Specification that Yield Random or Robust Outcomes
inferredcites →https://doi.org/10.1186/1471-2164-6-43openalex-snapshot
Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens
inferredcites →https://doi.org/10.1186/1746-4811-3-12openalex-snapshot
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
inferredcites →https://doi.org/10.1186/1746-4811-3-3openalex-snapshot
Kinome profiling of Arabidopsis using arrays of kinase consensus substrates.
inferredcites →https://doi.org/10.1242/dev.02491openalex-snapshot
Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis
inferredcites →https://doi.org/10.1242/dev.060582openalex-snapshot
RSL genes are sufficient for rhizoid system development in early diverging land plants
inferredcites →https://doi.org/10.1242/dev.076091openalex-snapshot
AP2-type transcription factors determine stem cell identity in the moss Physcomitrella patens
inferredcites →https://doi.org/10.1371/journal.pcbi.0030233openalex-snapshot
Small Regulatory RNAs May Sharpen Spatial Expression Patterns
inferredcites →https://doi.org/10.1371/journal.pcbi.0040008openalex-snapshot
Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback
inferredcites →https://doi.org/10.1371/journal.pcbi.1003112openalex-snapshot
Dual Delayed Feedback Provides Sensitivity and Robustness to the NF-κB Signaling Module
inferredcites →https://doi.org/10.1371/journal.pgen.1000314openalex-snapshot
Physcomitrella patens DCL3 Is Required for 22–24 nt siRNA Accumulation, Suppression of Retrotransposon-Derived Transcripts, and Normal Development
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Genome-Wide Analysis of leafbladeless1-Regulated and Phased Small RNAs Underscores the Importance of the TAS3 ta-siRNA Pathway to Maize Development
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System for Stable β-Estradiol-Inducible Gene Expression in the Moss Physcomitrella patens
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A Cladistic Approach to the Phylogeny of the "Bryophytes"
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