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Whole genome sequencing of field isolates reveals extensive genetic diversity in Plasmodium vivax from Colombia
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi1110s43openalex-snapshot
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1016/0040-5809(75)90020-9openalex-snapshot
On the number of segregating sites in genetical models without recombination
inferredcites →https://doi.org/10.1016/j.actatropica.2013.07.005openalex-snapshot
Distribution of dihydrofolate reductase (dhfr) and dihydropteroate synthase (dhps) mutant alleles in Plasmodium vivax isolates from Thailand
inferredcites →https://doi.org/10.1016/j.exppara.2008.08.012openalex-snapshot
Plasmodium vivax: Microsatellite analysis of multiple-clone infections
inferredcites →https://doi.org/10.1016/j.exppara.2013.03.029openalex-snapshot
Higher microsatellite diversity in Plasmodium vivax than in sympatric Plasmodium falciparum populations in Pursat, Western Cambodia
inferredcites →https://doi.org/10.1016/j.ijpara.2007.02.010openalex-snapshot
Contrasting genetic structure in Plasmodium vivax populations from Asia and South America
inferredcites →https://doi.org/10.1016/j.meegid.2011.10.003openalex-snapshot
Molecular assessment of dhfr/dhps mutations among Plasmodium vivax clinical isolates after introduction of sulfadoxine/pyrimethamine in combination with artesunate in Iran
inferredcites →https://doi.org/10.1016/j.pt.2006.09.007openalex-snapshot
The origin and age of Plasmodium vivax
inferredcites →https://doi.org/10.1016/j.tig.2014.12.005openalex-snapshot
Paths to a malaria vaccine illuminated by parasite genomics
inferredcites →https://doi.org/10.1016/s1473-3099(09)70177-xopenalex-snapshot
Key gaps in the knowledge of Plasmodium vivax, a neglected human malaria parasite
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672308009579openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1021/acsinfecdis.5b00049openalex-snapshot
Next-Generation Sequencing of Plasmodium vivax Patient Samples Shows Evidence of Direct Evolution in Drug-Resistance Genes
inferredcites →https://doi.org/10.1038/hdy.2010.21openalex-snapshot
Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites
inferredcites →https://doi.org/10.1038/nature07327openalex-snapshot
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
inferredcites →https://doi.org/10.1038/ng.2373openalex-snapshot
The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
inferredcites →https://doi.org/10.1038/ng.528openalex-snapshot
Plasmodium falciparum genome-wide scans for positive selection, recombination hot spots and resistance to antimalarial drugs
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrg1348openalex-snapshot
Microsatellites: simple sequences with complex evolution
inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01576.xopenalex-snapshot
Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis
inferredcites →https://doi.org/10.1073/pnas.0409652102openalex-snapshot
A monkey's tale: The origin of Plasmodium vivax as a human malaria parasite
inferredcites →https://doi.org/10.1073/pnas.1003776107openalex-snapshot
Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes
inferredcites →https://doi.org/10.1073/pnas.1210585109openalex-snapshot
Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite
inferredcites →https://doi.org/10.1073/pnas.1306004110openalex-snapshot
Diversity, host switching and evolution of Plasmodium vivax infecting African great apes
inferredcites →https://doi.org/10.1074/jbc.m806944200openalex-snapshot
Disruption of a Plasmodium falciparum Multidrug Resistance-associated Protein (PfMRP) Alters Its Fitness and Transport of Antimalarial Drugs and Glutathione
inferredcites →https://doi.org/10.1093/bioinformatics/btm404openalex-snapshot
Clustal W and Clustal X version 2.0
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr174openalex-snapshot
BamTools: a C++ API and toolkit for analyzing and managing BAM files
inferredcites →https://doi.org/10.1093/bioinformatics/btr539openalex-snapshot
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
inferredcites →https://doi.org/10.1093/bioinformatics/btu356openalex-snapshot
Toward better understanding of artifacts in variant calling from high-coverage samples
inferredcites →https://doi.org/10.1093/gbe/evu267openalex-snapshot
Genome-Wide Patterns of Genetic Polymorphism and Signatures of Selection in Plasmodium vivax
inferredcites →https://doi.org/10.1093/genetics/105.2.437openalex-snapshot
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/123.4.887openalex-snapshot
The "hitchhiking effect" revisited.
inferredcites →https://doi.org/10.1093/molbev/msi168openalex-snapshot
Mitochondrial Genome Sequences Support Ancient Population Expansion in Plasmodium vivax
inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
inferredcites →https://doi.org/10.1093/molbev/msq119openalex-snapshot
Allele Frequency-Based and Polymorphism-Versus-Divergence Indices of Balancing Selection in a New Filtered Set of Polymorphic Genes in Plasmodium falciparum
inferredcites →https://doi.org/10.1093/molbev/mss082openalex-snapshot
The Plasmodium Apicoplast Genome: Conserved Structure and Close Relationship of P. ovale to Rodent Malaria Parasites
inferredcites →https://doi.org/10.1093/molbev/mst104openalex-snapshot
The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05480.xopenalex-snapshot
Inferring the evolutionary history of Indian Plasmodium vivax from population genetic analyses of multilocus nuclear DNA fragments
inferredcites →https://doi.org/10.1128/aac.00091-09openalex-snapshot
Polymorphism in PfMRP1 ( Plasmodium falciparum Multidrug Resistance Protein 1) Amino Acid 1466 Associated with Resistance to Sulfadoxine-Pyrimethamine Treatment
inferredcites →https://doi.org/10.1128/aac.00623-08openalex-snapshot
Hitchhiking and Selective Sweeps of Plasmodium falciparum Sulfadoxine and Pyrimethamine Resistance Alleles in a Population from Central Africa
inferredcites →https://doi.org/10.1186/1471-2148-8-123openalex-snapshot
Polymorphism at the apical membrane antigen 1 locus reflects the world population history of Plasmodium vivax
inferredcites →https://doi.org/10.1186/1475-2875-10-102openalex-snapshot
Molecular epidemiology of Plasmodium vivax anti-folate resistance in India
inferredcites →https://doi.org/10.1186/1475-2875-11-412openalex-snapshot
Local population structure of Plasmodium: impact on malaria control and elimination
inferredcites →https://doi.org/10.1186/1475-2875-11-77openalex-snapshot
Differences in selective pressure on dhps and dhfr drug resistant mutations in western Kenya
inferredcites →https://doi.org/10.1186/1475-2875-12-15openalex-snapshot
Fitness components and natural selection: why are there different patterns on the emergence of drug resistance in Plasmodium falciparum and Plasmodium vivax?
inferredcites →https://doi.org/10.1186/1475-2875-12-261openalex-snapshot
Prevalence of drug resistance associated mutations in Plasmodium vivax against sulphadoxine-pyrimethamine in southern Pakistan
inferredcites →https://doi.org/10.1186/1475-2875-12-447openalex-snapshot
A call to arms: on refining Plasmodium vivax microsatellite marker panels for comparing global diversity
inferredcites →https://doi.org/10.1186/1475-2875-7-35openalex-snapshot
Plasmodium vivax dhfr and dhps mutations in isolates from Madagascar and therapeutic response to sulphadoxine-pyrimethamine
inferredcites →https://doi.org/10.1186/1475-2875-7-93openalex-snapshot
Genetic diversity of vaccine candidate antigens in Plasmodium falciparum isolates from the Amazon basin of Peru
inferredcites →https://doi.org/10.1186/1475-2875-8-14openalex-snapshot
Initial evidence of reduction of malaria cases and deaths in Rwanda and Ethiopia due to rapid scale-up of malaria prevention and treatment
inferredcites →https://doi.org/10.1186/1756-3305-4-80openalex-snapshot
Monitoring resistance of Plasmdium vivax: Point mutations in dihydrofolate reductase gene in isolates from Central China
inferredcites →https://doi.org/10.1186/s12936-015-0678-3openalex-snapshot
Clinical profile of Plasmodium falciparum and Plasmodium vivax infections in low and unstable malaria transmission settings of Colombia
inferredcites →https://doi.org/10.1371/journal.pgen.1001099openalex-snapshot
Long- and Short-Term Selective Forces on Malaria Parasite Genomes
inferredcites →https://doi.org/10.1371/journal.pgen.1002992openalex-snapshot
Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites
inferredcites →https://doi.org/10.1371/journal.pmed.1000055openalex-snapshot
Multiple Origins and Regional Dispersal of Resistant dhps in African Plasmodium falciparum Malaria
inferredcites →https://doi.org/10.1371/journal.pntd.0001424openalex-snapshot
Multiplicity and Diversity of Plasmodium vivax Infections in a Highly Endemic Region in Papua New Guinea
inferredcites →https://doi.org/10.1371/journal.pntd.0001811openalex-snapshot
Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax
inferredcites →https://doi.org/10.1371/journal.pntd.0002425openalex-snapshot
Neutral Polymorphisms in Putative Housekeeping Genes and Tandem Repeats Unravels the Population Genetics and Evolutionary History of Plasmodium vivax in India
inferredcites →https://doi.org/10.1371/journal.pntd.0003566openalex-snapshot
Comparative Analysis of Field-Isolate and Monkey-Adapted Plasmodium vivax Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0001089openalex-snapshot
Chloroquine Resistant Plasmodium vivax: In Vitro Characterisation and Association with Molecular Polymorphisms
inferredcites →https://doi.org/10.1371/journal.pone.0029137openalex-snapshot
The Origins of African Plasmodium vivax; Insights from Mitochondrial Genome Sequencing
inferredcites →https://doi.org/10.1371/journal.ppat.1000830openalex-snapshot
Origin and Evolution of Sulfadoxine Resistant Plasmodium falciparum
inferredcites →https://doi.org/10.1534/genetics.112.139949openalex-snapshot
Neutrality Tests for Sequences with Missing Data
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.4269/ajtmh.12-0701openalex-snapshot
Plasmodium vivax Isolates from Cambodia and Thailand Show High Genetic Complexity and Distinct Patterns of P. vivax Multidrug Resistance Gene 1 (pvmdr1) Polymorphisms
inferredcites →https://doi.org/10.4269/ajtmh.15-0005openalex-snapshot
Malaria Molecular Epidemiology: Lessons from the International Centers of Excellence for Malaria Research Network
inferredcites →https://doi.org/10.4269/ajtmh.2006.75.617openalex-snapshot
AMINO ACID MUTATIONS IN PLASMODIUM VIVAX DHFR AND DHPS FROM SEVERAL GEOGRAPHICAL REGIONS AND SUSCEPTIBILITY TO ANTIFOLATE DRUGS
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3389/fepid.2022.939291openalex-snapshot
Genomic approaches for monitoring transmission dynamics of malaria: A case for malaria molecular surveillance in Sub–Saharan Africa
inferred← citeshttps://doi.org/10.3390/biology11040587openalex-snapshot
Whole Genome Sequencing Contributions and Challenges in Disease Reduction Focused on Malaria
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