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Adaptation to heavy-metal contaminated environments proceeds via selection on pre-existing genetic variation

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Outgoing claims: the papers this work cites, builds on, or argues with.

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INTRASPECIFIC VARIABILITY IN THE RESPONSE OF CERTAIN NATIVE PLANT SPECIES TO SERPENTINE SOIL
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Multicopper oxidases: modular structure, sequence space, and evolutionary relationships
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CueO Is a Multi-copper Oxidase That Confers Copper Tolerance in Escherichia coli
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Heavy metal tolerance in plants: A model evolutionary system
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Function of Nutrients
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A large transposable element mediates metal resistance in the fungus Paecilomyces variotii
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Population genomics of rapid adaptation by soft selective sweeps
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Heavy Metal Tolerance in Plants
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Populations of Agrostis tenuis Resistant to Lead and Zinc Poisoning
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The potential for evolution of heavy metal tolerance in plants
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The genetic control of copper tolerance in the yellow monkey flower, Mimulus guttatus
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Reproductive isolation as a pleiotropic effect of copper tolerance in Mimulus guttatus?
inferredcites →https://doi.org/10.1038/hdy.1993.162openalex-snapshot
Heritability and distribution of variation in degree of copper tolerance in Mimulus guttatus at Copperopolis, California
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The effect of zinc contamination from electricity pylons. Genetic constraints on selection for zinc tolerance
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Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4
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Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
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The industrial melanism mutation in British peppered moths is a transposable element
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Convergent adaptation of human lactase persistence in Africa and Europe
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Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects
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Genetic assimilation of ancestral plasticity during parallel adaptation to zinc contamination in Silene uniflora
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Transcriptional regulation of nitrogen-associated metabolism and growth
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Allele-specific expression analysis for complex genetic phenotypes applied to a unique dilated cardiomyopathy cohort
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Pattern of polymorphism after strong artificial selection in a domestication event
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Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli
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Gene amplification confers glyphosate resistance in Amaranthus palmeri
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Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing
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An enhancer of Agouti contributes to parallel evolution of cryptically colored beach mice
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Methionine-rich domains emerge as facilitators of copper recruitment in detoxification systems
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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
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Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels
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STAR: ultrafast universal RNA-seq aligner
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Functional analysis of the threeHMA4copies of the metal hyperaccumulatorArabidopsis halleri
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Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize
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Primer3Plus, an enhanced web interface to Primer3
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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limma powers differential expression analyses for RNA-sequencing and microarray studies
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The Ecology of Adaptive Radiation
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Copper tolerance in some Californian populations of the monkey flower, Mimulus guttatus
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Copper-responsive gene regulation in bacteria
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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Zinc-Dependent Global Transcriptional Control, Transcriptional Deregulation, and Higher Gene Copy Number for Genes in Metal Homeostasis of the Hyperaccumulator Arabidopsis halleri
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Identification of Genes Involved in Metal Transport in Plants
inferredcites →https://doi.org/10.1105/tpc.111.090431openalex-snapshot
Transcriptome Sequencing Identifies SPL7-Regulated Copper Acquisition Genes FRO4/FRO5 and the Copper Dependence of Iron Homeostasis in Arabidopsis
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The evolutionary origins of pesticide resistance
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The dispersal characteristics of the invasive plant Mimulus guttatus and the ecological significance of increased occurrence of high‐flow events
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THE UPTAKE OF COPPER BY PLANTS OF MIMULUS GUTTATUS DIFFERING IN GENOTYPE PRIMARILY AT A SINGLE MAJOR COPPER TOLERANCE LOCUS
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DIFFERENTIAL TOLERANCE OF THREE CULTIVARS OF AGROSTIS CAPILLARIS L. TO CADMIUM, COPPER, LEAD, NICKEL AND ZINC
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The effect of zinc contamination from electricity pylons. Contrasting patterns of evolution in five grass species
inferredcites →https://doi.org/10.1111/j.1469-8137.1993.tb03846.xopenalex-snapshot
The genetics of metal tolerance in vascular plants
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GEOGRAPHIC VARIATION, SPECIATION, AND CLINES
inferredcites →https://doi.org/10.1111/mec.12720openalex-snapshot
The genomic signature of parallel adaptation from shared genetic variation
inferredcites →https://doi.org/10.1111/mec.13922openalex-snapshot
Population structure and local selection yield high genomic variation in Mimulus guttatus
inferredcites →https://doi.org/10.1111/nph.14093openalex-snapshot
Potential preadaptation to anthropogenic pollution: evidence from a common quantitative trait locus for zinc and cadmium tolerance in metallicolous and nonmetallicolous accessions of Arabidopsis halleri
inferredcites →https://doi.org/10.1111/nph.14647openalex-snapshot
Two Silene vulgaris copper transporters residing in different cellular compartments confer copper hypertolerance by distinct mechanisms when expressed in Arabidopsis thaliana
inferredcites →https://doi.org/10.1126/science.1074170openalex-snapshot
A Single P450 Allele Associated with Insecticide Resistance in Drosophila
inferredcites →https://doi.org/10.1126/science.1107239openalex-snapshot
Widespread Parallel Evolution in Sticklebacks by Repeated Fixation of Ectodysplasin Alleles
inferredcites →https://doi.org/10.1126/science.1182213openalex-snapshot
Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
inferredcites →https://doi.org/10.1126/science.aah4993openalex-snapshot
The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish
inferredcites →https://doi.org/10.1126/science.aan1425openalex-snapshot
DNA fragility in the parallel evolution of pelvic reduction in stickleback fish
inferredcites →https://doi.org/10.1126/science.aav4155openalex-snapshot
Adaptive introgression enables evolutionary rescue from extreme environmental pollution
inferredcites →https://doi.org/10.1126/science.abo7293openalex-snapshot
Rapid weed adaptation and range expansion in response to agriculture over the past two centuries
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110316-023011openalex-snapshot
Evolutionary Rescue
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1353/ohq.2005.0085openalex-snapshot
Calaveras Gold: The Impact of Mining on a Mother Lode County by Ronald H. Limbaugh, Willard P. Fuller, Jr.
inferredcites →https://doi.org/10.1371/journal.pbio.1001497openalex-snapshot
Indirect Evolution of Hybrid Lethality Due to Linkage with Selected Locus in Mimulus guttatus
inferredcites →https://doi.org/10.1371/journal.pgen.1000924openalex-snapshot
Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites
inferredcites →https://doi.org/10.1371/journal.pgen.1000998openalex-snapshot
Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus
inferredcites →https://doi.org/10.1371/journal.pgen.1002337openalex-snapshot
Successive Increases in the Resistance of Drosophila to Viral Infection through a Transposon Insertion Followed by a Duplication
inferredcites →https://doi.org/10.1371/journal.pgen.1004551openalex-snapshot
The Population Genetics of Evolutionary Rescue
inferredcites →https://doi.org/10.1534/genetics.108.086835openalex-snapshot
Detecting Local Adaptation Using the Joint Sampling of Polymorphism Data in the Parental and Derived Populations
inferredcites →https://doi.org/10.1534/genetics.115.178962openalex-snapshot
A Coalescent Model for a Sweep of a Unique Standing Variant
inferredcites →https://doi.org/10.1534/genetics.117.300417openalex-snapshot
Distinguishing Among Modes of Convergent Adaptation Using Population Genomic Data
inferredcites →https://doi.org/10.1534/genetics.118.301824openalex-snapshot
Pervasive Linked Selection and Intermediate-Frequency Alleles Are Implicated in an Evolve-and-Resequencing Experiment of Drosophila simulans
inferredcites →https://doi.org/10.1554/05-273.1openalex-snapshot
THE SIGNATURE OF POSITIVE SELECTION ON STANDING GENETIC VARIATION
inferredcites →https://doi.org/10.2307/199385openalex-snapshot
The Copper Resources of California
inferredcites →https://doi.org/10.3929/ethz-b-000105397openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.7554/elife.70242openalex-snapshot
Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.etap.2024.104390openalex-snapshot
Genotoxicity responses of single and mixed exposure to heavy metals (cadmium, silver, and copper) as environmental pollutants in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1016/j.pbi.2017.02.003openalex-snapshot
The genomic basis of adaptation in plants
inferred← citeshttps://doi.org/10.1038/s41559-019-1063-3openalex-snapshot
Root microbiota assembly and adaptive differentiation among European Arabidopsis populations
inferred← citeshttps://doi.org/10.1038/s41598-018-33938-2openalex-snapshot
Transmembrane transport and stress response genes play an important role in adaptation of Arabidopsis halleri to metalliferous soils
inferred← citeshttps://doi.org/10.1073/pnas.1616755114openalex-snapshot
Population-genomic inference of the strength and timing of selection against gene flow
inferred← citeshttps://doi.org/10.1093/genetics/iyaa020openalex-snapshot
Characterizing the genetic basis of copper toxicity in Drosophila reveals a complex pattern of allelic, regulatory, and behavioral variation
inferred← citeshttps://doi.org/10.1093/molbev/msab141openalex-snapshot
Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution
inferred← citeshttps://doi.org/10.1101/072736openalex-snapshot
Population-genomic inference of the strength and timing of selection against gene flow
inferred← citeshttps://doi.org/10.1111/2041-210x.12777openalex-snapshot
Identifying targets and agents of selection: innovative methods to evaluate the processes that contribute to local adaptation
inferred← citeshttps://doi.org/10.1111/eva.13648openalex-snapshot
Independently evolved pollution resistance in four killifish populations is largely explained by few variants of large effect
inferred← citeshttps://doi.org/10.1111/evo.13476openalex-snapshot
Differential adaptation to a harsh granite outcrop habitat between sympatric Mimulus species
inferred← citeshttps://doi.org/10.1111/mec.14922openalex-snapshot
Major QTL controls adaptation to serpentine soils in Mimulus guttatus
inferred← citeshttps://doi.org/10.1111/mec.14930openalex-snapshot
The genomic basis of adaptation to calcareous and siliceous soils in Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1111/mec.70180openalex-snapshot
Identifying the Degree of Gene Reuse During Repeated Adaptation
inferred← citeshttps://doi.org/10.1186/s12862-020-1598-6openalex-snapshot
Phenology-dependent cold exposure and thermal performance of Ostrinia nubilalis ecotypes
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006949openalex-snapshot
GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity
inferred← citeshttps://doi.org/10.1534/genetics.117.300417openalex-snapshot
Distinguishing Among Modes of Convergent Adaptation Using Population Genomic Data
inferred← citeshttps://doi.org/10.3389/fgene.2023.1144221openalex-snapshot
The genetic basis of adaptation to copper pollution in Drosophila melanogaster
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