On the public citation graph

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

https://doi.org/10.1101/030619
0 signed · 51 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/path.1700590109openalex-snapshot
Staphylococcal hæmolysins on sheep‐blood agar with evidence for a fourth hæmolysin
inferredcites →https://doi.org/10.1006/jmbi.2000.4315openalex-snapshot
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
inferredcites →https://doi.org/10.1007/978-1-62703-646-7_6openalex-snapshot
Clustal Omega, Accurate Alignment of Very Large Numbers of Sequences
inferredcites →https://doi.org/10.1007/s13361-015-1181-3openalex-snapshot
The H-Index of ‘An Approach to Correlate Tandem Mass Spectral Data of Peptides with Amino Acid Sequences in a Protein Database’
inferredcites →https://doi.org/10.1016/1044-0305(94)80016-2openalex-snapshot
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
inferredcites →https://doi.org/10.1016/j.cell.2009.01.043openalex-snapshot
Regulatory RNAs in Bacteria
inferredcites →https://doi.org/10.1016/j.chroma.2005.04.059openalex-snapshot
Limitations of current proteomics technologies
inferredcites →https://doi.org/10.1016/j.jprot.2013.04.036openalex-snapshot
Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
inferredcites →https://doi.org/10.1016/j.jprot.2015.05.011openalex-snapshot
Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori
inferredcites →https://doi.org/10.1016/j.mib.2011.01.007openalex-snapshot
An expanding universe of small proteins
inferredcites →https://doi.org/10.1016/j.molcel.2011.08.022openalex-snapshot
Regulation by Small RNAs in Bacteria: Expanding Frontiers
inferredcites →https://doi.org/10.1016/s0196-9781(01)00492-2openalex-snapshot
A peptide profile of the Bacillus subtilis genome
inferredcites →https://doi.org/10.1021/bi200417kopenalex-snapshot
Investigating Endogenous Peptides and Peptidases Using Peptidomics
inferredcites →https://doi.org/10.1021/pr500202eopenalex-snapshot
MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra
inferredcites →https://doi.org/10.1038/nature08756openalex-snapshot
The primary transcriptome of the major human pathogen Helicobacter pylori
inferredcites →https://doi.org/10.1038/nature10965openalex-snapshot
The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria
inferredcites →https://doi.org/10.1038/nbt1012openalex-snapshot
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
inferredcites →https://doi.org/10.1038/nrmicro3316openalex-snapshot
Pervasive transcription: illuminating the dark matter of bacterial transcriptomes
inferredcites →https://doi.org/10.1073/pnas.0708102104openalex-snapshot
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
inferredcites →https://doi.org/10.1073/pnas.1113521108openalex-snapshot
Genome-wide antisense transcription drives mRNA processing in bacteria
inferredcites →https://doi.org/10.1073/pnas.1315152111openalex-snapshot
A variable homopolymeric G-repeat defines small RNA-mediated posttranscriptional regulation of a chemotaxis receptor in Helicobacter pylori
inferredcites →https://doi.org/10.1093/bioinformatics/btg467openalex-snapshot
Comparison of various algorithms for recognizing short coding sequences of human genes
inferredcites →https://doi.org/10.1093/bioinformatics/btm009openalex-snapshot
Identifying bacterial genes and endosymbiont DNA with Glimmer
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr020openalex-snapshot
Dalliance: interactive genome viewing on the web
inferredcites →https://doi.org/10.1093/bioinformatics/btr209openalex-snapshot
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
inferredcites →https://doi.org/10.1093/bioinformatics/btr275openalex-snapshot
Identification of prokaryotic small proteins using a comparative genomic approach
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/nar/gkn823openalex-snapshot
APD2: the updated antimicrobial peptide database and its application in peptide design
inferredcites →https://doi.org/10.1093/nar/gkq054openalex-snapshot
Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families
inferredcites →https://doi.org/10.1093/nar/gkq454openalex-snapshot
Identification of regulatory RNAs in Bacillus subtilis
inferredcites →https://doi.org/10.1093/nar/gks1264openalex-snapshot
BSRD: a repository for bacterial small regulatory RNA
inferredcites →https://doi.org/10.1099/mic.0.2007/006205-0openalex-snapshot
A genome-wide survey of short coding sequences in streptococci
inferredcites →https://doi.org/10.1099/mic.0.2008/019703-0openalex-snapshot
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools
inferredcites →https://doi.org/10.1101/gr.082701.108openalex-snapshot
Most mammalian mRNAs are conserved targets of microRNAs
inferredcites →https://doi.org/10.1111/j.1365-2958.2008.06495.xopenalex-snapshot
Small membrane proteins found by comparative genomics and ribosome binding site models
inferredcites →https://doi.org/10.1111/j.1365-2958.2009.06830.xopenalex-snapshot
The transcriptionally active regions in the genome of Bacillus subtilis
inferredcites →https://doi.org/10.1111/j.1365-2958.2010.07158.xopenalex-snapshot
A dual‐function sRNA from B. subtilis : SR1 acts as a peptide encoding mRNA on the gapA operon
inferredcites →https://doi.org/10.1126/science.1206848openalex-snapshot
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
inferredcites →https://doi.org/10.1126/science.1215110openalex-snapshot
High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling
inferredcites →https://doi.org/10.1128/aem.05068-11openalex-snapshot
Toxin-Antitoxin Systems Influence Biofilm and Persister Cell Formation and the General Stress Response
inferredcites →https://doi.org/10.1128/jb.00872-09openalex-snapshot
Small Stress Response Proteins in Escherichia coli : Proteins Missed by Classical Proteomic Studies
inferredcites →https://doi.org/10.1128/jb.184.20.5733-5745.2002openalex-snapshot
Correlations between Shine-Dalgarno Sequences and Gene Features Such as Predicted Expression Levels and Operon Structures
inferredcites →https://doi.org/10.1145/1656274.1656278openalex-snapshot
The WEKA data mining software
inferredcites →https://doi.org/10.1186/1471-2105-11-131openalex-snapshot
Missing genes in the annotation of prokaryotic genomes
inferredcites →https://doi.org/10.1261/rna.2536111openalex-snapshot
RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data
inferredcites →https://doi.org/10.1371/journal.pone.0016968openalex-snapshot
Connecting Peptide Physicochemical and Antimicrobial Properties by a Rational Prediction Model
inferredcites →https://doi.org/10.1371/journal.pone.0017570openalex-snapshot
Sequencing Illustrates the Transcriptional Response of Legionella pneumophila during Infection and Identifies Seventy Novel Small Non-Coding RNAs
inferredcites →https://doi.org/10.1371/journal.ppat.1002788openalex-snapshot
Control of Virulence by Small RNAs in Streptococcus pneumoniae
inferredcites →https://doi.org/10.4137/bbi.s3030openalex-snapshot
Classifying Coding DNA with Nucleotide Statistics
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.