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Thermal age, cytosine deamination and the veracity of 8,000 year old wheat DNA from sediments

https://doi.org/10.1101/032060

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201400160openalex-snapshot

The future of ancient DNA: Technical advances and conceptual shifts

inferredcites →https://doi.org/10.1016/j.celrep.2015.06.027openalex-snapshot

Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic

inferredcites →https://doi.org/10.1016/s0047-2484(03)00106-4openalex-snapshot

The thermal history of human fossils and the likelihood of successful DNA amplification

inferredcites →https://doi.org/10.1038/362709a0openalex-snapshot

Instability and decay of the primary structure of DNA

inferredcites →https://doi.org/10.1038/nature08835openalex-snapshot

Ancient human genome sequence of an extinct Palaeo-Eskimo

inferredcites →https://doi.org/10.1038/nature12323openalex-snapshot

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

inferredcites →https://doi.org/10.1038/nature12960openalex-snapshot

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

inferredcites →https://doi.org/10.1038/nature13025openalex-snapshot

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

inferredcites →https://doi.org/10.1038/nature14507openalex-snapshot

Population genomics of Bronze Age Eurasia

inferredcites →https://doi.org/10.1038/ncomms1701openalex-snapshot

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing

inferredcites →https://doi.org/10.1038/ncomms6257openalex-snapshot

Genome flux and stasis in a five millennium transect of European prehistory

inferredcites →https://doi.org/10.1038/srep05559openalex-snapshot

Genomic methylation patterns in archaeological barley show de-methylation as a time-dependent diagenetic process

inferredcites →https://doi.org/10.1073/pnas.1105107108openalex-snapshot

Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death

inferredcites →https://doi.org/10.1073/pnas.1209896109openalex-snapshot

Complete mitochondrial DNA genome sequences from the first New Zealanders

inferredcites →https://doi.org/10.1073/pnas.1318934111openalex-snapshot

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

inferredcites →https://doi.org/10.1073/pnas.1416991111openalex-snapshot

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btt193openalex-snapshot

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

inferredcites →https://doi.org/10.1098/rspb.2012.1745openalex-snapshot

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

inferredcites →https://doi.org/10.1098/rstb.2013.0624openalex-snapshot

Partial uracil–DNA–glycosylase treatment for screening of ancient DNA

inferredcites →https://doi.org/10.1126/science.1261278openalex-snapshot

Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago

inferredcites →https://doi.org/10.1179/2054892315y.0000000005openalex-snapshot

Amplification of TruSeq ancient DNA libraries with AccuPrime Pfx: consequences on nucleotide misincorporation and methylation patterns

inferredcites →https://doi.org/10.1371/journal.pone.0034131openalex-snapshot

Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA

inferredcites →https://doi.org/10.1371/journal.pone.0078575openalex-snapshot

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

inferredcites →https://doi.org/10.3390/biology1030895openalex-snapshot

FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms

inferredcites →https://doi.org/10.7554/elife.00731openalex-snapshot

The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine

inferredcites →https://doi.org/10.7554/elife.10005openalex-snapshot

Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/13836_2018_52openalex-snapshot

Ancient Pathogens Through Human History: A Paleogenomic Perspective

inferred← citeshttps://doi.org/10.1007/978-3-031-43799-1_3openalex-snapshot

The Sedimentary Ancient DNA Workflow

inferred← citeshttps://doi.org/10.1007/978-3-319-53160-1_20openalex-snapshot

Doggerland and the Lost Frontiers Project (2015–2020)

inferred← citeshttps://doi.org/10.1038/ng.3611openalex-snapshot

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

inferred← citeshttps://doi.org/10.1093/molbev/msw184openalex-snapshot

Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX

inferred← citeshttps://doi.org/10.1101/105759openalex-snapshot

Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica

inferred← citeshttps://doi.org/10.1111/mec.14514openalex-snapshot

High‐Throughput DNA sequencing of ancient wood

inferred← citeshttps://doi.org/10.23919/eusipco.2018.8553297openalex-snapshot

Metagenomic composition analysis of sedimentary ancient DNA from the Isle of Wight

inferred← citeshttps://doi.org/10.3389/fevo.2022.888421openalex-snapshot

MetaDamage tool: Examining post-mortem damage in sedaDNA on a metagenomic scale

inferred← citeshttps://doi.org/10.82444/warw.33739132openalex-snapshot

Niche partitioning in Great British bats through dietary specialisation.

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