On the public citation graph
State aggregation for fast likelihood computations in molecular evolution
0 signed · 47 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/sim.5808openalex-snapshot
State‐space size considerations for disease‐progression models
inferredcites →https://doi.org/10.1006/clad.1993.1030openalex-snapshot
CHARACTER OPTIMIZATION AND CALCULATION OF TREE LENGTHS
inferredcites →https://doi.org/10.1006/clad.1996.0040openalex-snapshot
Efficient Incremental Character Optimization
inferredcites →https://doi.org/10.1006/clad.1998.0082openalex-snapshot
Fast Fitch-Parsimony Algorithms for Large Data Sets
inferredcites →https://doi.org/10.1007/978-1-4615-2241-6_12openalex-snapshot
Compositional Markovian Modelling Using a Process Algebra
inferredcites →https://doi.org/10.1007/bf01734359openalex-snapshot
Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1016/j.entcs.2012.05.018openalex-snapshot
Model Decomposition and Stochastic Fragments
inferredcites →https://doi.org/10.1016/j.jmb.2011.06.005openalex-snapshot
Markovian and Non-Markovian Protein Sequence Evolution: Aggregated Markov Process Models
inferredcites →https://doi.org/10.1016/j.jtbi.2012.07.007openalex-snapshot
Simplification of reversible Markov chains by removal of states with low equilibrium occupancy
inferredcites →https://doi.org/10.1021/jp063367kopenalex-snapshot
Hidden Markov Model Analysis of Multichromophore Photobleaching
inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
inferredcites →https://doi.org/10.1080/10635150500354688openalex-snapshot
An Empirical Examination of the Utility of Codon-Substitution Models in Phylogeny Reconstruction
inferredcites →https://doi.org/10.1089/cmb.2006.13.1701openalex-snapshot
Conjugate Gibbs Sampling for Bayesian Phylogenetic Models
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/bti191openalex-snapshot
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/bti713openalex-snapshot
Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/btm532openalex-snapshot
Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models
inferredcites →https://doi.org/10.1093/bioinformatics/bts555openalex-snapshot
Phylogenetics, likelihood, evolution and complexity
inferredcites →https://doi.org/10.1093/bioinformatics/btt760openalex-snapshot
Optimization strategies for fast detection of positive selection on phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/btu012openalex-snapshot
Evolutionary footprint of coevolving positions in genes
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
inferredcites →https://doi.org/10.1093/molbev/msh137openalex-snapshot
Genome-Scale Phylogeny and the Detection of Systematic Biases
inferredcites →https://doi.org/10.1093/molbev/msi237openalex-snapshot
Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msm144openalex-snapshot
On Reduced Amino Acid Alphabets for Phylogenetic Inference
inferredcites →https://doi.org/10.1093/molbev/msr162openalex-snapshot
Evolutionary Models Accounting for Layers of Selection in Protein-Coding Genes and their Impact on the Inference of Positive Selection
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msu400openalex-snapshot
RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
inferredcites →https://doi.org/10.1093/molbev/msv022openalex-snapshot
Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
inferredcites →https://doi.org/10.1093/nar/gkn768openalex-snapshot
Selectome: a database of positive selection
inferredcites →https://doi.org/10.1093/nar/gkt1065openalex-snapshot
Selectome update: quality control and computational improvements to a database of positive selection
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025888openalex-snapshot
Models of amino acid substitution and applications to mitochondrial protein evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040152openalex-snapshot
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1093/sysbio/22.3.240openalex-snapshot
Maximum Likelihood and Minimum-Steps Methods for Estimating Evolutionary Trees from Data on Discrete Characters
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1101/gr.073585.107openalex-snapshot
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
inferredcites →https://doi.org/10.1109/ipdps.2004.1303212openalex-snapshot
New fast and accurate heuristics for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1109/ipdpsw.2012.88openalex-snapshot
SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model
inferredcites →https://doi.org/10.1111/j.1467-9868.2004.00439.xopenalex-snapshot
Strong Control, Conservative Point Estimation and Simultaneous Conservative Consistency of False Discovery Rates: A Unified Approach
inferredcites →https://doi.org/10.1186/1471-2105-15-s2-s8openalex-snapshot
Statistical tests to identify appropriate types of nucleotide sequence recoding in molecular phylogenetics
inferredcites →https://doi.org/10.1371/journal.pcbi.0030211openalex-snapshot
Detecting Coevolution in and among Protein Domains
inferredcites →https://doi.org/10.1371/journal.pgen.1002764openalex-snapshot
Detecting Individual Sites Subject to Episodic Diversifying Selection
inferredcites →https://doi.org/10.1534/genetics.104.031153openalex-snapshot
Accuracy and Power of Statistical Methods for Detecting Adaptive Evolution in Protein Coding Sequences and for Identifying Positively Selected Sites
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.70675/e1915911z709dz4cfez85b5z4f21b4040e8bopenalex-snapshot
Phylogenetic detection of protein sites associated to a phenotype, at the genome scale
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.