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Bayesian analysis of normal mouse cell lineage trees allowing intra-individual, cell population specific mutation rates

https://doi.org/10.1101/040733
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00160154openalex-snapshot
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
inferredcites →https://doi.org/10.1016/j.cell.2012.06.030openalex-snapshot
Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm
inferredcites →https://doi.org/10.1016/j.tig.2005.04.001openalex-snapshot
Should phylogenetic models be trying to ‘fit an elephant’?
inferredcites →https://doi.org/10.1017/cbo9781139095112openalex-snapshot
Bayesian Evolutionary Analysis with BEAST
inferredcites →https://doi.org/10.1038/emboj.2011.26openalex-snapshot
Lgr5 intestinal stem cells have high telomerase activity and randomly segregate their chromosomes
inferredcites →https://doi.org/10.1038/nature13448openalex-snapshot
Genome sequencing of normal cells reveals developmental lineages and mutational processes
inferredcites →https://doi.org/10.1038/ng.3221openalex-snapshot
Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue
inferredcites →https://doi.org/10.1038/nrg3542openalex-snapshot
Single-cell sequencing-based technologies will revolutionize whole-organism science
inferredcites →https://doi.org/10.1073/pnas.022629899openalex-snapshot
Mutation rates in mammalian genomes
inferredcites →https://doi.org/10.1073/pnas.0601265103openalex-snapshot
Phylogenetic fate mapping
inferredcites →https://doi.org/10.1073/pnas.1221068110openalex-snapshot
Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation
inferredcites →https://doi.org/10.1093/bioinformatics/btq110openalex-snapshot
DensiTree: making sense of sets of phylogenetic trees
inferredcites →https://doi.org/10.1093/molbev/mss243openalex-snapshot
Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics
inferredcites →https://doi.org/10.1126/science.1234852openalex-snapshot
Growing Self-Organizing Mini-Guts from a Single Intestinal Stem Cell: Mechanism and Applications
inferredcites →https://doi.org/10.1126/science.1247125openalex-snapshot
Organogenesis in a dish: Modeling development and disease using organoid technologies
inferredcites →https://doi.org/10.1186/1471-2148-13-221openalex-snapshot
Looking for trees in the forest: summary tree from posterior samples
inferredcites →https://doi.org/10.1371/journal.pcbi.0010050openalex-snapshot
Genomic Variability within an Organism Exposes Its Cell Lineage Tree
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.3851/imp2656openalex-snapshot
Evolutionary Rates and Hbv: Issues of Rate Estimation with Bayesian Molecular Methods

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inferred← citeshttps://doi.org/10.1109/tcbb.2020.2992813openalex-snapshot
Comparing Phylogenetic Approaches to Reconstructing Cell Lineage From Microsatellites With Missing Data
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