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The Effects of Ribosome Autocatalysis and Negative Feedback in Resource Competition

https://doi.org/10.1101/042127
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/biot.201200085openalex-snapshot
Contextualizing context for synthetic biology – identifying causes of failure of synthetic biological systems
inferredcites →https://doi.org/10.1006/jmbi.1993.1319openalex-snapshot
Synthesis of Proteins in Escherichia coli is Limited by the Concentration of Free Ribosomes
inferredcites →https://doi.org/10.1007/978-1-4471-6675-7openalex-snapshot
Feedback Control: Linear, Nonlinear and Robust Techniques and Design with Industrial Applications
inferredcites →https://doi.org/10.1016/j.bbagen.2011.05.014openalex-snapshot
Bacterial growth rate reflects a bottleneck in resource allocation
inferredcites →https://doi.org/10.1016/j.bpj.2015.06.034openalex-snapshot
Isocost Lines Describe the Cellular Economy of Genetic Circuits
inferredcites →https://doi.org/10.1016/j.copbio.2014.01.001openalex-snapshot
Bacterial growth: global effects on gene expression, growth feedback and proteome partition
inferredcites →https://doi.org/10.1016/j.molcel.2010.04.015openalex-snapshot
Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth
inferredcites →https://doi.org/10.1016/j.tibtech.2014.11.009openalex-snapshot
Modularity, context-dependence, and insulation in engineered biological circuits
inferredcites →https://doi.org/10.1016/s0092-8674(03)00762-1openalex-snapshot
Structure of the Mammalian Mitochondrial Ribosome Reveals an Expanded Functional Role for Its Component Proteins
inferredcites →https://doi.org/10.1038/nmeth.2926openalex-snapshot
Principles of genetic circuit design
inferredcites →https://doi.org/10.1038/nmeth.3339openalex-snapshot
Quantifying cellular capacity identifies gene expression designs with reduced burden
inferredcites →https://doi.org/10.1042/bj2860313openalex-snapshot
Metabolic control analysis: a survey of its theoretical and experimental development
inferredcites →https://doi.org/10.1049/ip-syb:20060023openalex-snapshot
Is there an optimal ribosome concentration for maximal protein production?
inferredcites →https://doi.org/10.1073/pnas.1019383108openalex-snapshot
Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA
inferredcites →https://doi.org/10.1109/acc.2013.6580053openalex-snapshot
Biomolecular resource utilization in elementary cell-free gene circuits
inferredcites →https://doi.org/10.1109/acc.2015.7172024openalex-snapshot
Effective interaction graphs arising from resource limitations in gene networks
inferredcites →https://doi.org/10.1109/cdc.2014.7040239openalex-snapshot
Modelling essential interactions between synthetic genes and their chassis cell
inferredcites →https://doi.org/10.1111/febs.13258openalex-snapshot
How fast‐growing bacteria robustly tune their ribosome concentration to approximate growth‐rate maximization
inferredcites →https://doi.org/10.1111/j.1365-2958.1992.tb02206.xopenalex-snapshot
High copy number of the pUC plasmid results from a Rom/Rop‐suppressible point mutation in RNA II
inferredcites →https://doi.org/10.1126/science.1188308openalex-snapshot
Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
inferredcites →https://doi.org/10.1126/science.1192588openalex-snapshot
Interdependence of Cell Growth and Gene Expression: Origins and Consequences
inferredcites →https://doi.org/10.1126/science.1200705openalex-snapshot
Glycolytic Oscillations and Limits on Robust Efficiency
inferredcites →https://doi.org/10.1128/mmbr.54.2.89-100.1990openalex-snapshot
Metabolic growth rate control in Escherichia coli may be a consequence of subsaturation of the macromolecular biosynthetic apparatus with substrates and catalytic components
inferredcites →https://doi.org/10.1128/mmbr.55.2.316-333.1991openalex-snapshot
Growth rate of Escherichia coli
inferredcites →https://doi.org/10.1146/annurev.micro.50.1.645openalex-snapshot
rRNA TRANSCRIPTION AND GROWTH RATE–DEPENDENT REGULATION OF RIBOSOME SYNTHESIS IN ESCHERICHIA COLI
inferredcites →https://doi.org/10.1146/annurev.micro.62.081307.162903openalex-snapshot
(p)ppGpp: Still Magical?
inferredcites →https://doi.org/10.1201/9780429258770openalex-snapshot
Cell Biology by the Numbers
inferredcites →https://doi.org/10.1371/journal.pcbi.1000545openalex-snapshot
Invariant Distribution of Promoter Activities in Escherichia coli
inferredcites →https://doi.org/10.1371/journal.pone.0028494openalex-snapshot
How Molecular Competition Influences Fluxes in Gene Expression Networks
inferredcites →https://doi.org/10.1515/9781400850501openalex-snapshot
Biomolecular Feedback Systems
inferredcites →https://doi.org/10.15252/msb.20145379openalex-snapshot
Emergence of robust growth laws from optimal regulation of ribosome synthesis
inferredcites →https://doi.org/10.15252/msb.20145697openalex-snapshot
Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria
inferredcites →https://doi.org/10.23943/princeton/9780691161532.001.0001openalex-snapshot
Biomolecular Feedback Systems

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1021/acssynbio.1c00041openalex-snapshot
Emergent Damped Oscillation Induced by Nutrient-Modulating Growth Feedback
inferred← citeshttps://doi.org/10.1186/s13036-017-0090-3openalex-snapshot
Re-using biological devices: a model-aided analysis of interconnected transcriptional cascades designed from the bottom-up
inferred← citeshttps://doi.org/10.3389/fbioe.2021.743950openalex-snapshot
CRISPR Interference Modules as Low-Burden Logic Inverters in Synthetic Circuits
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