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Phylogenetic expression profiling reveals widespread coordinated evolution of gene expression
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
inferredcites →https://doi.org/10.1016/j.cell.2008.06.016openalex-snapshot
A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
inferredcites →https://doi.org/10.1016/j.cell.2014.05.034openalex-snapshot
Expansion of Biological Pathways Based on Evolutionary Inference
inferredcites →https://doi.org/10.1016/j.celrep.2015.01.025openalex-snapshot
Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling
inferredcites →https://doi.org/10.1016/j.neurobiolaging.2013.11.022openalex-snapshot
Golgin-84-associated Golgi fragmentation triggers tau hyperphosphorylation by activation of cyclin-dependent kinase-5 and extracellular signal-regulated kinase
inferredcites →https://doi.org/10.1016/s0092-8674(04)00412-xopenalex-snapshot
Decoding Cilia Function
inferredcites →https://doi.org/10.1016/s0092-8674(04)00450-7openalex-snapshot
Comparative Genomics Identifies a Flagellar and Basal Body Proteome that Includes the BBS5 Human Disease Gene
inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
inferredcites →https://doi.org/10.1038/msb.2013.50openalex-snapshot
Human disease locus discovery and mapping to molecular pathways through phylogenetic profiling
inferredcites →https://doi.org/10.1038/nature05911openalex-snapshot
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
inferredcites →https://doi.org/10.1038/nature11779openalex-snapshot
Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/nrg3522openalex-snapshot
Ecological genomics of local adaptation
inferredcites →https://doi.org/10.1038/scientificamerican0108-42aopenalex-snapshot
The Wellcome Trust Case Control Consortium, U.K.
inferredcites →https://doi.org/10.1073/pnas.0402354101openalex-snapshot
Bardet–Biedl syndrome type 4 (BBS4)-null mice implicate Bbs4 in flagella formation but not global cilia assembly
inferredcites →https://doi.org/10.1073/pnas.0402591101openalex-snapshot
Coevolution of gene expression among interacting proteins
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.0710685105openalex-snapshot
The Parkinson's disease protein α-synuclein disrupts cellular Rab homeostasis
inferredcites →https://doi.org/10.1073/pnas.0910200107openalex-snapshot
Systematic discovery of nonobvious human disease models through orthologous phenotypes
inferredcites →https://doi.org/10.1073/pnas.1320192111openalex-snapshot
Aβ-induced Golgi fragmentation in Alzheimer’s disease enhances Aβ production
inferredcites →https://doi.org/10.1073/pnas.96.8.4285openalex-snapshot
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
inferredcites →https://doi.org/10.1086/423903openalex-snapshot
Comparative Genomic Analysis Identifies an ADP-Ribosylation Factor–like Gene as the Cause of Bardet-Biedl Syndrome (BBS3)
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btm098openalex-snapshot
UniRef: comprehensive and non-redundant UniProt reference clusters
inferredcites →https://doi.org/10.1093/bioinformatics/btu273openalex-snapshot
GRASP: analysis of genotype–phenotype results from 1390 genome-wide association studies and corresponding open access database
inferredcites →https://doi.org/10.1093/emboj/18.12.3491openalex-snapshot
Xeroderma pigmentosum variant (XP‐V) correcting protein from HeLa cells has a thymine dimer bypass DNA polymerase activity
inferredcites →https://doi.org/10.1093/molbev/msn173openalex-snapshot
Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage
inferredcites →https://doi.org/10.1093/nar/gki261openalex-snapshot
Relative predicted protein levels of functionally associated proteins are conserved across organisms
inferredcites →https://doi.org/10.1093/nar/gkt1026openalex-snapshot
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
inferredcites →https://doi.org/10.1093/nar/gku967openalex-snapshot
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease
inferredcites →https://doi.org/10.1101/gr.130468.111openalex-snapshot
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
inferredcites →https://doi.org/10.1101/gr.152710.112openalex-snapshot
Gene expression drives local adaptation in humans
inferredcites →https://doi.org/10.1111/acel.12283openalex-snapshot
Gene expression defines natural changes in mammalian lifespan
inferredcites →https://doi.org/10.1146/annurev-genet-110711-155511openalex-snapshot
Genetics of Climate Change Adaptation
inferredcites →https://doi.org/10.1186/1471-2164-15-888openalex-snapshot
De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis
inferredcites →https://doi.org/10.1371/journal.pbio.1001889openalex-snapshot
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1001375openalex-snapshot
Adaptations to Climate-Mediated Selective Pressures in Humans
inferredcites →https://doi.org/10.1371/journal.pone.0047385openalex-snapshot
A Genome-Wide Association Study of Circulating Galectin-3
inferredcites →https://doi.org/10.1371/journal.pone.0097801openalex-snapshot
Comparative Transcriptome Analysis of Four Prymnesiophyte Algae
inferredcites →https://doi.org/10.1371/journal.pone.0101418openalex-snapshot
De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton
inferredcites →https://doi.org/10.2337/diabetes.53.7.1857openalex-snapshot
Genome-wide Linkage Analysis for Severe Obesity in French Caucasians Finds Significant Susceptibility Locus on Chromosome 19q
inferredcites →https://doi.org/10.3389/fmicb.2014.00375openalex-snapshot
De novo assembly of Aureococcus anophagefferens transcriptomes reveals diverse responses to the low nutrient and low light conditions present during blooms
inferredcites →https://doi.org/10.3389/fnins.2015.00340openalex-snapshot
Golgi fragmentation in Alzheimer's disease
inferredcites →https://doi.org/10.7554/elife.00603openalex-snapshot
Evolutionary principles of modular gene regulation in yeasts
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