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Functional partitioning of local and distal gene expression regulation in multiple human tissues

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1 of the 48 references listed on this page is in the Retraction Watch database as retracted (export 2026-11-04): 10.1038/nature13005 (notice 2021-08-11).

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.ajhg.2011.08.004openalex-snapshot

Epistatic Selection between Coding and Regulatory Variation in Human Evolution and Disease

inferredcites →https://doi.org/10.1016/j.ajhg.2014.03.004openalex-snapshot

Joint Analysis of Functional Genomic Data and Genome-wide Association Studies of 18 Human Traits

inferredcites →https://doi.org/10.1016/j.ajhg.2014.10.001openalex-snapshot

Cross-Tissue and Tissue-Specific eQTLs: Partitioning the Heritability of a Complex Trait

inferredcites →https://doi.org/10.1016/j.ajhg.2014.10.004openalex-snapshot

Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases

inferredcites →https://doi.org/10.1016/j.ajhg.2015.09.004openalex-snapshot

Alternative Splicing QTLs in European and African Populations

inferredcites →https://doi.org/10.1016/j.ajhg.2015.12.023openalex-snapshot

A Burden of Rare Variants Associated with Extremes of Gene Expression in Human Peripheral Blood

inferredcites →https://doi.org/10.1016/j.cell.2013.09.053openalex-snapshot

Super-Enhancers in the Control of Cell Identity and Disease

inferredcites →https://doi.org/10.1038/nature09906openalex-snapshot

Mapping and analysis of chromatin state dynamics in nine human cell types

inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot

An integrated encyclopedia of DNA elements in the human genome

inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot

An integrated map of genetic variation from 1,092 human genomes

inferredcites →https://doi.org/10.1038/nature12531openalex-snapshot

Transcriptome and genome sequencing uncovers functional variation in humans

inferredcites →https://doi.org/10.1038/nature13005openalex-snapshot

RETRACTED ARTICLE: Detection and replication of epistasis influencing transcription in humans

inferredcites →https://doi.org/10.1038/nature13691openalex-snapshot

Another explanation for apparent epistasis

inferredcites →https://doi.org/10.1038/nature13835openalex-snapshot

Genetic and epigenetic fine mapping of causal autoimmune disease variants

inferredcites →https://doi.org/10.1038/nature14154openalex-snapshot

Super-enhancers delineate disease-associated regulatory nodes in T cells

inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot

Integrative analysis of 111 reference human epigenomes

inferredcites →https://doi.org/10.1038/ng.2394openalex-snapshot

Mapping cis- and trans-regulatory effects across multiple tissues in twins

inferredcites →https://doi.org/10.1038/ng.2504openalex-snapshot

Chromatin marks identify critical cell types for fine mapping complex trait variants

inferredcites →https://doi.org/10.1038/ng.2756openalex-snapshot

Systematic identification of trans eQTLs as putative drivers of known disease associations

inferredcites →https://doi.org/10.1038/ng.2951openalex-snapshot

Heritability and genomics of gene expression in peripheral blood

inferredcites →https://doi.org/10.1038/ng.3162openalex-snapshot

Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins

inferredcites →https://doi.org/10.1038/ng.3211openalex-snapshot

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

inferredcites →https://doi.org/10.1038/ng.3220openalex-snapshot

Identification of common genetic variants controlling transcript isoform variation in human whole blood

inferredcites →https://doi.org/10.1038/ng.3367openalex-snapshot

A gene-based association method for mapping traits using reference transcriptome data

inferredcites →https://doi.org/10.1038/ng.3404openalex-snapshot

Partitioning heritability by functional annotation using genome-wide association summary statistics

inferredcites →https://doi.org/10.1038/ng.3406openalex-snapshot

An atlas of genetic correlations across human diseases and traits

inferredcites →https://doi.org/10.1038/ng.3506openalex-snapshot

Integrative approaches for large-scale transcriptome-wide association studies

inferredcites →https://doi.org/10.1038/ng.3507openalex-snapshot

Weighting sequence variants based on their annotation increases power of whole-genome association studies

inferredcites →https://doi.org/10.1038/nrg3891openalex-snapshot

The role of regulatory variation in complex traits and disease

inferredcites →https://doi.org/10.1038/nrm3454openalex-snapshot

NMD: a multifaceted response to premature translational termination

inferredcites →https://doi.org/10.1086/521580openalex-snapshot

Family-Based Association Tests for Genomewide Association Scans

inferredcites →https://doi.org/10.1093/nar/gks1284openalex-snapshot

Integrative annotation of chromatin elements from ENCODE data

inferredcites →https://doi.org/10.1101/gr.155192.113openalex-snapshot

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

inferredcites →https://doi.org/10.1101/gr.193342.115openalex-snapshot

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

inferredcites →https://doi.org/10.1126/science.1222794openalex-snapshot

Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

inferredcites →https://doi.org/10.1126/science.1243490openalex-snapshot

Exonic Transcription Factor Binding Directs Codon Choice and Affects Protein Evolution

inferredcites →https://doi.org/10.1126/science.1260793openalex-snapshot

Impact of regulatory variation from RNA to protein

inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

inferredcites →https://doi.org/10.1186/gb-2012-13-1-r7openalex-snapshot

Dissecting the regulatory architecture of gene expression QTLs

inferredcites →https://doi.org/10.1371/journal.pgen.1000214openalex-snapshot

High-Resolution Mapping of Expression-QTLs Yields Insight into Human Gene Regulation

inferredcites →https://doi.org/10.1371/journal.pgen.1000358openalex-snapshot

Learning a Prior on Regulatory Potential from eQTL Data

inferredcites →https://doi.org/10.1371/journal.pgen.1001317openalex-snapshot

Single-Tissue and Cross-Tissue Heritability of Gene Expression Via Identity-by-Descent in Related or Unrelated Individuals

inferredcites →https://doi.org/10.1371/journal.pgen.1002003openalex-snapshot

The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study

inferredcites →https://doi.org/10.1371/journal.pgen.1003486openalex-snapshot

A Statistical Framework for Joint eQTL Analysis in Multiple Tissues

inferredcites →https://doi.org/10.1371/journal.pgen.1003864openalex-snapshot

Partitioning the Heritability of Tourette Syndrome and Obsessive Compulsive Disorder Reveals Differences in Genetic Architecture

inferredcites →https://doi.org/10.1371/journal.pgen.1004722openalex-snapshot

Integrating Functional Data to Prioritize Causal Variants in Statistical Fine-Mapping Studies

inferredcites →https://doi.org/10.1371/journal.pgen.1004958openalex-snapshot

Tissue-Specific Effects of Genetic and Epigenetic Variation on Gene Regulation and Splicing

inferredcites →https://doi.org/10.1534/genetics.107.075614openalex-snapshot

Genomewide Rapid Association Using Mixed Model and Regression: A Fast and Simple Method For Genomewide Pedigree-Based Quantitative Trait Loci Association Analysis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10519-018-9914-2openalex-snapshot

Characterizing the Relation Between Expression QTLs and Complex Traits: Exploring the Role of Tissue Specificity

inferred← citeshttps://doi.org/10.1101/067355openalex-snapshot

Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights

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