On the public citation graph

Promoter architecture and sex-specific gene expression in the microcrustacean Daphnia pulex revealed by large-scale profiling of 5′-mRNA ends

https://doi.org/10.1101/047894
0 signed · 62 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1112s47openalex-snapshot
BEDTools: The Swiss‐Army Tool for Genome Feature Analysis
inferredcites →https://doi.org/10.1002/j.1538-7305.1948.tb01338.xopenalex-snapshot
A Mathematical Theory of Communication
inferredcites →https://doi.org/10.1002/wdev.21openalex-snapshot
Perspectives on the RNA polymerase II core promoter
inferredcites →https://doi.org/10.1006/dbio.2000.9656openalex-snapshot
Characterization of Polo-like Kinase 1 during Meiotic Maturation of the Mouse Oocyte
inferredcites →https://doi.org/10.1007/978-1-4939-0805-9_7openalex-snapshot
Detecting Expressed Genes Using CAGE
inferredcites →https://doi.org/10.1007/978-1-60761-944-4_10openalex-snapshot
Deep Cap Analysis of Gene Expression
inferredcites →https://doi.org/10.1007/978-1-61779-292-2_11openalex-snapshot
CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks
inferredcites →https://doi.org/10.1007/s10577-010-9159-2openalex-snapshot
Abortive meiosis in the oogenesis of parthenogenetic Daphnia pulex
inferredcites →https://doi.org/10.1016/j.biolcel.2003.09.008openalex-snapshot
Aurora A, Meiosis and Mitosis
inferredcites →https://doi.org/10.1016/j.mce.2005.11.022openalex-snapshot
A candidate juvenoid hormone receptor cis-element in the Daphnia magna hb2 hemoglobin gene promoter
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.ydbio.2009.08.009openalex-snapshot
Regulation of gene expression via the core promoter and the basal transcriptional machinery
inferredcites →https://doi.org/10.1016/s1097-2765(02)00604-4openalex-snapshot
Ordered Recruitment
inferredcites →https://doi.org/10.1023/a:1003231628456openalex-snapshot
COMBO: a defined freshwater culture medium for algae and zooplankton
inferredcites →https://doi.org/10.1038/nature12974openalex-snapshot
Two independent transcription initiation codes overlap on vertebrate core promoters
inferredcites →https://doi.org/10.1038/nature13182openalex-snapshot
A promoter-level mammalian expression atlas
inferredcites →https://doi.org/10.1038/ncomms6336openalex-snapshot
Nuclear stability and transcriptional directionality separate functionally distinct RNA species
inferredcites →https://doi.org/10.1038/ng1789openalex-snapshot
Genome-wide analysis of mammalian promoter architecture and evolution
inferredcites →https://doi.org/10.1038/nmeth.1216openalex-snapshot
Efficient targeted transcript discovery via array-based normalization of RACE libraries
inferredcites →https://doi.org/10.1038/nmeth.3252openalex-snapshot
Orchestrating high-throughput genomic analysis with Bioconductor
inferredcites →https://doi.org/10.1038/nmeth0306-211openalex-snapshot
CAGE: cap analysis of gene expression
inferredcites →https://doi.org/10.1038/nprot.2012.005openalex-snapshot
5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing
inferredcites →https://doi.org/10.1038/nrg2026openalex-snapshot
Mammalian RNA polymerase II core promoters: insights from genome-wide studies
inferredcites →https://doi.org/10.1038/nrg3163openalex-snapshot
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
inferredcites →https://doi.org/10.1073/pnas.0510310103openalex-snapshot
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
inferredcites →https://doi.org/10.1073/pnas.1313388110openalex-snapshot
Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex
inferredcites →https://doi.org/10.1086/283761openalex-snapshot
Obligate Asexuality in Daphnia
inferredcites →https://doi.org/10.1093/bioinformatics/btl505openalex-snapshot
TimeTree: a public knowledge-base of divergence times among organisms
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/nar/30.1.207openalex-snapshot
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
inferredcites →https://doi.org/10.1093/nar/gkm272openalex-snapshot
STAMP: a web tool for exploring DNA-binding motif similarities
inferredcites →https://doi.org/10.1093/nar/gkp950openalex-snapshot
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1093/nar/gkv054openalex-snapshot
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
inferredcites →https://doi.org/10.1093/nar/gkv416openalex-snapshot
The MEME Suite
inferredcites →https://doi.org/10.1101/gad.1026202openalex-snapshot
The RNA polymerase II core promoter: a key component in the regulation of gene expression
inferredcites →https://doi.org/10.1101/gr.112466.110openalex-snapshot
Genome-wide analysis of promoter architecture in Drosophila melanogaster
inferredcites →https://doi.org/10.1101/gr.151571.112openalex-snapshot
The transcription start site landscape of C. elegans
inferredcites →https://doi.org/10.1101/gr.153692.112openalex-snapshot
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
inferredcites →https://doi.org/10.1101/gr.159384.113openalex-snapshot
Comparative validation of the D. melanogaster modENCODE transcriptome annotation
inferredcites →https://doi.org/10.1101/gr.1953904openalex-snapshot
Clustering of DNA Sequences in Human Promoters
inferredcites →https://doi.org/10.1101/gr.6831208openalex-snapshot
A code for transcription initiation in mammalian genomes
inferredcites →https://doi.org/10.1111/j.1558-5646.1989.tb02622.xopenalex-snapshot
THE DISTRIBUTION OF LIFE‐HISTORY VARIATION IN THE DAPHNIA PULEX COMPLEX
inferredcites →https://doi.org/10.1126/science.1175326openalex-snapshot
A Spindle Assembly Checkpoint Protein Functions in Prophase I Arrest and Prometaphase Progression
inferredcites →https://doi.org/10.1126/science.1197761openalex-snapshot
The Ecoresponsive Genome of Daphnia pulex
inferredcites →https://doi.org/10.1126/science.1259418openalex-snapshot
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
inferredcites →https://doi.org/10.1186/1471-2148-9-78openalex-snapshot
Meiosis genes in Daphnia pulexand the role of parthenogenesis in genome evolution
inferredcites →https://doi.org/10.1186/1471-2164-14-412openalex-snapshot
Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production
inferredcites →https://doi.org/10.1186/gb-2002-3-12-research0087openalex-snapshot
Computational analysis of core promoters in the Drosophila genome
inferredcites →https://doi.org/10.1186/gb-2006-7-7-r53openalex-snapshot
Comparative genomics of Drosophila and human core promoters
inferredcites →https://doi.org/10.1186/gb-2007-8-2-r24openalex-snapshot
Quantifying similarity between motifs
inferredcites →https://doi.org/10.1186/gb-2009-10-7-r73openalex-snapshot
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome
inferredcites →https://doi.org/10.1186/gb-2009-10-7-r79openalex-snapshot
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
inferredcites →https://doi.org/10.1186/gb-2014-15-2-r29openalex-snapshot
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
inferredcites →https://doi.org/10.1214/14-sts476openalex-snapshot
Scalable Genomics with R and Bioconductor
inferredcites →https://doi.org/10.1371/journal.pcbi.0030007openalex-snapshot
Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1001147openalex-snapshot
Cdc20 Is Critical for Meiosis I and Fertility of Female Mice
inferredcites →https://doi.org/10.1534/genetics.109.101147openalex-snapshot
Nucleotide Polymorphism and Within-Gene Recombination in Daphnia magna and D. pulex, Two Cyclical Parthenogens
inferredcites →https://doi.org/10.18637/jss.v032.i06openalex-snapshot
mixtools : An R Package for Analyzing Finite Mixture Models
inferredcites →https://doi.org/10.25080/tcwv9851openalex-snapshot
Exploring Network Structure, Dynamics, and Function using NetworkX
inferredcites →https://doi.org/10.5451/unibas-ep13505openalex-snapshot
Ecology, epidemiology, and evolution of parasitism in daphnia
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.