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Levels and patterns of genetic diversity differ between two closely related endemic Arabidopsis species

https://doi.org/10.1101/048785
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Arabidopsis thaliana 's wild relatives: an updated overview on systematics, taxonomy and evolution
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Effects of population size on genetic diversity and seed production in the rare Dictamnus albus(Rutaceae) in central Germany
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STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
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The Neutral Theory of Molecular Evolution
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Poorly known relatives of Arabidopsis thaliana
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Assessing rapid evolution in a changing environment
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Population size and the rate of evolution
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Genetic diversity and fitness in Scabiosa columbaria in the Swiss Jura in relation to population size
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Biodiversity hotspots for conservation priorities
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Extinction risk from climate change
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Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis
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Continent-wide response of mountain vegetation to climate change
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
inferredcites →https://doi.org/10.1038/ng.911openalex-snapshot
Whole-genome sequencing of multiple Arabidopsis thaliana populations
inferredcites →https://doi.org/10.1038/nrg2526openalex-snapshot
Effective population size and patterns of molecular evolution and variation
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Genome-wide genetic marker discovery and genotyping using next-generation sequencing
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The Neutral Theory of Molecular Evolution
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Comparative allozyme and microsatellite population structure in a narrow endemic plant species,Centaurea corymbosaPourret (Asteraceae)
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Most species are not driven to extinction before genetic factors impact them
inferredcites →https://doi.org/10.1073/pnas.0701338104openalex-snapshot
Evolution and genetic differentiation among relatives of Arabidopsis thaliana
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Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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pegas: an R package for population genetics with an integrated–modular approach
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The variant call format and VCFtools
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Inference of Population Structure Using Multilocus Genotype Data
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Distortion of allele frequency distributions provides a test for recent population bottlenecks
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Genetic Drift Linked to Heterogeneous Landscape and Ecological Specialization Drives Diversification in the Alpine Endemic Columbine Aquilegia thalictrifolia
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Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks
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The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae
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Effective Population Size Is Positively Correlated with Levels of Adaptive Divergence among Annual Sunflowers
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Nomenclature for incompletely specified bases in nucleic acid sequences: rcommendations 1984
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The Mutational Meltdown in Asexual Populations
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Evolutionary rescue and the limits of adaptation
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Evolutionary rescue: an emerging focus at the intersection between ecology and evolution
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Fast model-based estimation of ancestry in unrelated individuals
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A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History
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How general are positive relationships between plant population size, fitness and genetic variation?
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02683.xopenalex-snapshot
Molecular evidence for glacial refugia of mountain plants in the European Alps
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03547.xopenalex-snapshot
High selfing and high inbreeding depression in peripheral populations ofJuncus atratus
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Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance,Arabidopsis halleri(Brassicaceae)
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aflpdat : a collection of r functions for convenient handling of AFLP data
inferredcites →https://doi.org/10.1111/j.1523-1739.2010.01552.xopenalex-snapshot
Interacting Effects of Phenotypic Plasticity and Evolution on Population Persistence in a Changing Climate
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/j.1558-5646.1993.tb01215.xopenalex-snapshot
ISOLATION BY DISTANCE IN EQUILIBRIUM AND NON-EQUILIBRIUM POPULATIONS
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02591.xopenalex-snapshot
Inferring weak population structure with the assistance of sample group information
inferredcites →https://doi.org/10.1111/mec.12350openalex-snapshot
Genotyping‐by‐sequencing in ecological and conservation genomics
inferredcites →https://doi.org/10.1111/mec.12907openalex-snapshot
Population genetics of Setaria viridis, a new model system
inferredcites →https://doi.org/10.1111/mec.13046openalex-snapshot
Establishing the evolutionary compatibility of potential sources of colonizers for overfished stocks: a population genomics approach
inferredcites →https://doi.org/10.1126/science.1156831openalex-snapshot
A Significant Upward Shift in Plant Species Optimum Elevation During the 20th Century
inferredcites →https://doi.org/10.1126/science.1180677openalex-snapshot
The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
inferredcites →https://doi.org/10.1126/science.aaa3952openalex-snapshot
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
inferredcites →https://doi.org/10.1146/annurev.es.24.110193.001245openalex-snapshot
Population Genetic Consequences of Small Population Size: Implications for Plant Conservation
inferredcites →https://doi.org/10.1146/annurev.ge.29.120195.001513openalex-snapshot
CONSERVATION GENETICS
inferredcites →https://doi.org/10.1186/1471-2148-14-1openalex-snapshot
Modern maize varieties going local in the semi-arid zone in Tanzania
inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
inferredcites →https://doi.org/10.1186/preaccept-1775653123133997openalex-snapshot
Taming the wild: resolving the gene pools of non-model Arabidopsis lineages
inferredcites →https://doi.org/10.1371/journal.pbio.0030196openalex-snapshot
The Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pbio.0050310openalex-snapshot
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
inferredcites →https://doi.org/10.1371/journal.pbio.1001388openalex-snapshot
Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
inferredcites →https://doi.org/10.1371/journal.pone.0002411openalex-snapshot
Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata
inferredcites →https://doi.org/10.1371/journal.pone.0004010openalex-snapshot
A Meta-Analysis of Local Adaptation in Plants
inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
inferredcites →https://doi.org/10.1371/journal.pone.0026872openalex-snapshot
Does Speciation between Arabidopsis halleri and Arabidopsis lyrata Coincide with Major Changes in a Molecular Target of Adaptation?
inferredcites →https://doi.org/10.1371/journal.pone.0032253openalex-snapshot
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
inferredcites →https://doi.org/10.1534/genetics.110.118661openalex-snapshot
The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes
inferredcites →https://doi.org/10.1534/genetics.166.1.373openalex-snapshot
Multilocus Analysis of Variation and Speciation in the Closely Related Species Arabidopsis halleri and A. lyrata
inferredcites →https://doi.org/10.2307/1940179openalex-snapshot
Partialling out the Spatial Component of Ecological Variation
inferredcites →https://doi.org/10.2307/3391949openalex-snapshot
A Synopsis of Arabidopsis (Brassicaceae)
inferredcites →https://doi.org/10.2307/3647382openalex-snapshot
Spatial and Temporal Patterns in the Evolution of the Flora of the European Alpine System
inferredcites →https://doi.org/10.2307/3647447openalex-snapshot
Patterns of endemism and comparative phylogeography confirm palaeo‐environmental evidence for Pleistocene refugia in the Eastern Alps
inferredcites →https://doi.org/10.4172/2329-9533.1000101openalex-snapshot
Speeding Up Large-Scale Next Generation Sequencing Data Analysis with pBWA

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.338.2.8zenodo-depositor-declared
Second-step typification of the name Arabis pedemontana Boiss. (Brassicaceae)
inferred← citeshttps://doi.org/10.1093/jxb/ery340openalex-snapshot
The plant model system Arabidopsis set into an evolutionary, systematic and spatio-temporal context
inferred← citeshttps://doi.org/10.1111/mec.17624openalex-snapshot
Recent Origin of a Range‐Restricted Species With Subsequent Introgression in its Widespread Congener in the Phyteuma spicatum Group (Campanulaceae)
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