On the public citation graph
Cis/transgene optimization: systematic discovery of some key gene expression elements integrating bioinformatics and computational biology
0 signed · 103 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/bab.1204openalex-snapshot
Scaffold/matrix attachment regions from CHO cell chromosome enhanced the stable transfection efficiency and the expression of transgene in CHO cells
inferredcites →https://doi.org/10.1002/btpr.1690openalex-snapshot
Efficiency of different heterologous promoters in the unicellular microalga Chlamydomonas reinhardtii
inferredcites →https://doi.org/10.1002/j.1460-2075.1987.tb04716.xopenalex-snapshot
Selection of AUG initiation codons differs in plants and animals.
inferredcites →https://doi.org/10.1002/j.1460-2075.1994.tb06669.xopenalex-snapshot
The immediate downstream codon strongly influences the efficiency of utilization of eukaryotic translation initiation codons.
inferredcites →https://doi.org/10.1002/pro.408openalex-snapshot
Gene optimization mechanisms: A multi‐gene study reveals a high success rate of full‐length human proteins expressed in Escherichia coli
inferredcites →https://doi.org/10.1007/978-1-61779-005-8_28openalex-snapshot
Computational Prediction of RNA Structural Motifs Involved in Post-Transcriptional Regulatory Processes
inferredcites →https://doi.org/10.1007/978-3-642-15294-8_5openalex-snapshot
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs
inferredcites →https://doi.org/10.1007/978-90-481-2245-5_1openalex-snapshot
Use of MAR Elements to Increase the Production of Recombinant Proteins
inferredcites →https://doi.org/10.1007/bf00019011openalex-snapshot
The C-terminal KDEL sequence increases the expression level of a single-chain antibody designed to be targeted to both the cytosol and the secretory pathway in transgenic tobacco
inferredcites →https://doi.org/10.1007/s00122-004-1880-9openalex-snapshot
TM2, a novel strong matrix attachment region isolated from tobacco, increases transgene expression in transgenic rice calli and plants
inferredcites →https://doi.org/10.1007/s001220051546openalex-snapshot
Accumulation of maize γ-zein and γ-zein: KDEL to high levels in tobacco leaves and differential increase of BiP synthesis in transformants
inferredcites →https://doi.org/10.1007/s00253-007-1040-7openalex-snapshot
Increased expression of transgene in stably transformed cells of Dunaliella salina by matrix attachment regions
inferredcites →https://doi.org/10.1007/s00299-013-1417-2openalex-snapshot
A chimeric cry8Ea1 gene flanked by MARs efficiently controls Holotrichia parallela
inferredcites →https://doi.org/10.1007/s00425-008-0879-xopenalex-snapshot
Strategies to facilitate transgene expression in Chlamydomonas reinhardtii
inferredcites →https://doi.org/10.1007/s004360050254openalex-snapshot
Consensus sequence of translational initiation sites from Toxoplasma gondii genes
inferredcites →https://doi.org/10.1007/s00438-005-0055-yopenalex-snapshot
Contribution of 5′- and 3′-untranslated regions of plastid mRNAs to the expression of Chlamydomonas reinhardtii chloroplast genes
inferredcites →https://doi.org/10.1007/s11033-008-9333-1openalex-snapshot
Improvement of efficiency of genetic transformation for Dunaliella salina by glass beads method
inferredcites →https://doi.org/10.1007/s11248-008-9173-8openalex-snapshot
Expression of modified gene encoding functional human α-1-antitrypsin protein in transgenic tomato plants
inferredcites →https://doi.org/10.1007/s12033-010-9348-4openalex-snapshot
Molecular Factors Affecting the Accumulation of Recombinant Proteins in the Chlamydomonas reinhardtii Chloroplast
inferredcites →https://doi.org/10.1016/0022-2836(87)90418-9openalex-snapshot
At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells
inferredcites →https://doi.org/10.1016/0378-1119(87)90230-7openalex-snapshot
Characterisation of the 5′-leader sequence of tobacco mosaic virus RNA as a general enhancer of translation in vitro
inferredcites →https://doi.org/10.1016/j.bbamem.2010.06.015openalex-snapshot
Protein translocation across the ER membrane
inferredcites →https://doi.org/10.1016/j.bbrc.2006.07.209openalex-snapshot
mRNA secondary structure at start AUG codon is a key limiting factor for human protein expression in Escherichia coli
inferredcites →https://doi.org/10.1016/j.bbrc.2007.03.162openalex-snapshot
Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
inferredcites →https://doi.org/10.1016/j.bbrc.2007.08.140openalex-snapshot
Signal-3L: A 3-layer approach for predicting signal peptides
inferredcites →https://doi.org/10.1016/j.bbrc.2010.11.102openalex-snapshot
Insight into the structural organization of the omega leader of TMV RNA: The role of various regions of the sequence in the formation of a compact structure of the omega RNA
inferredcites →https://doi.org/10.1016/j.biotechadv.2009.07.004openalex-snapshot
Role of genetic factors and environmental conditions in recombinant protein production for molecular farming
inferredcites →https://doi.org/10.1016/j.biotechadv.2010.08.006openalex-snapshot
Strategies for high-level recombinant protein expression in transgenic microalgae: A review
inferredcites →https://doi.org/10.1016/j.biotechadv.2010.11.004openalex-snapshot
Advances in plant molecular farming
inferredcites →https://doi.org/10.1016/j.copbio.2005.01.005openalex-snapshot
Sowing the seeds of success: pharmaceutical proteins from plants
inferredcites →https://doi.org/10.1016/j.febslet.2009.10.053openalex-snapshot
The KDEL receptor: New functions for an old protein
inferredcites →https://doi.org/10.1016/j.gene.2012.03.049openalex-snapshot
Different matrix attachment regions flanking a transgene effectively enhance gene expression in stably transfected Chinese hamster ovary cells
inferredcites →https://doi.org/10.1016/j.jbiotec.2004.08.004openalex-snapshot
Advanced genetic strategies for recombinant protein expression in Escherichia coli
inferredcites →https://doi.org/10.1016/j.plantsci.2007.12.006openalex-snapshot
Factors influencing efficiency of transient gene expression in the red macrophyte Porphyra yezoensis
inferredcites →https://doi.org/10.1016/j.tibtech.2004.04.006openalex-snapshot
Codon bias and heterologous protein expression
inferredcites →https://doi.org/10.1016/j.tibtech.2006.06.012openalex-snapshot
Foreign protein degradation and instability in plants and plant tissue cultures
inferredcites →https://doi.org/10.1016/s0168-9452(00)00195-3openalex-snapshot
In vivo evaluation of the context sequence of the translation initiation codon in plants
inferredcites →https://doi.org/10.1016/s0378-1119(97)00232-1openalex-snapshot
Availability of a second upstream AUG can completely overcome inhibition of protein synthesis initiation engendered by mRNA secondary structure encompassing the start codon
inferredcites →https://doi.org/10.1021/bi000543lopenalex-snapshot
Folding of Green Fluorescent Protein and the Cycle3 Mutant
inferredcites →https://doi.org/10.1023/a:1005816823636openalex-snapshot
Context sequences of translation initiation codon in plants
inferredcites →https://doi.org/10.1023/a:1008937011213openalex-snapshot
Apoplastic and cytosolic expression of full‐size antibodies and antibody fragments in Nicotiana tabacum
inferredcites →https://doi.org/10.1023/a:1022509909838openalex-snapshot
Matrix attachment regions enhance transcription of a downstream transgene and the accessibility of its promoter region to micrococcal nuclease
inferredcites →https://doi.org/10.1023/b:japh.0000004298.89183.e5openalex-snapshot
Stable expression of hepatitis B surface antigen gene in Dunaliella salina (Chlorophyta)
inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot
SignalP 4.0: discriminating signal peptides from transmembrane regions
inferredcites →https://doi.org/10.1038/nmeth1076openalex-snapshot
Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
inferredcites →https://doi.org/10.1038/nprot.2007.131openalex-snapshot
Locating proteins in the cell using TargetP, SignalP and related tools
inferredcites →https://doi.org/10.1039/c5ra04546kopenalex-snapshot
Enhancement of protein production by microalgae Dunaliella salina under mixotrophic conditions using response surface methodology
inferredcites →https://doi.org/10.1046/j.1365-313x.1997.11020313.xopenalex-snapshot
The C‐terminal HDEL sequence is sufficient for retention of secretory proteins in the endoplasmic reticulum (ER) but promotes vacuolar targeting of proteins that escape the ER
inferredcites →https://doi.org/10.1046/j.1365-313x.1999.00446.xopenalex-snapshot
Matrix attachment regions increase transgene expression levels and stability in transgenic rice plants and their progeny
inferredcites →https://doi.org/10.1046/j.1365-313x.2000.00652.xopenalex-snapshot
The HSP70A promoter as a tool for the improved expression of transgenes in Chlamydomonas
inferredcites →https://doi.org/10.1046/j.1365-313x.2002.01371.xopenalex-snapshot
Sequence elements within an HSP70 promoter counteract transcriptional transgene silencing in Chlamydomonas
inferredcites →https://doi.org/10.1046/j.1467-7652.2003.00044.xopenalex-snapshot
A short synthetic MAR positively affects transgene expression in rice and Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.0401799101openalex-snapshot
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
inferredcites →https://doi.org/10.1073/pnas.0803169105openalex-snapshot
Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes
inferredcites →https://doi.org/10.1073/pnas.87.19.7668openalex-snapshot
Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis.
inferredcites →https://doi.org/10.1073/pnas.87.21.8301openalex-snapshot
Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes.
inferredcites →https://doi.org/10.1093/bib/1.1.33openalex-snapshot
Computer prediction of sites associated with various elements of the nuclear matrix
inferredcites →https://doi.org/10.1093/bioinformatics/16.8.741openalex-snapshot
A comparison of signal sequence prediction methods using a test set of signal peptides
inferredcites →https://doi.org/10.1093/emboj/16.9.2482openalex-snapshot
Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6
inferredcites →https://doi.org/10.1093/jb/mvq100openalex-snapshot
Characterization and heterologous expression of a new matrix attachment region binding protein from the unicellular green alga Dunaliella salina
inferredcites →https://doi.org/10.1093/nar/15.20.8125openalex-snapshot
An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs
inferredcites →https://doi.org/10.1093/nar/15.21.8693openalex-snapshot
A comparison of eukaryotic viral 5′-leader sequences as enhancers of mRNA expressionin vivo
inferredcites →https://doi.org/10.1093/nar/15.4.1353openalex-snapshot
Comparison of the consensus sequence flanking translational start sites inDrosophilaand vertebrates
inferredcites →https://doi.org/10.1093/nar/15.8.3581openalex-snapshot
Compilation and comparison of the sequence context around the AUG startcodons inSaccharomyces cerevisiaemRNAs
inferredcites →https://doi.org/10.1093/nar/19.10.2715openalex-snapshot
The sequence flanking translational initiation site in protozoa
inferredcites →https://doi.org/10.1093/nar/19.12.3185openalex-snapshot
Eukaryotic start and stop translation sites
inferredcites →https://doi.org/10.1093/nar/25.7.1419openalex-snapshot
Mathematical model to predict regions of chromatin attachment to the nuclear matrix
inferredcites →https://doi.org/10.1093/nar/28.1.292openalex-snapshot
Codon usage tabulated from international DNA sequence databases: status for the year 2000
inferredcites →https://doi.org/10.1093/nar/30.1.372openalex-snapshot
S/MARt DB: a database on scaffold/matrix attached regions
inferredcites →https://doi.org/10.1093/nar/gkm1102openalex-snapshot
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes
inferredcites →https://doi.org/10.1093/nar/gkm577openalex-snapshot
Selection for efficient translation initiation biases codon usage at second amino acid position in secretory proteins
inferredcites →https://doi.org/10.1093/nar/gkr436openalex-snapshot
High-level transgene expression by homologous recombination-mediated gene transfer
inferredcites →https://doi.org/10.1093/nar/gks1473openalex-snapshot
mRNA secondary structure optimization using a correlated stem–loop prediction
inferredcites →https://doi.org/10.1093/pcp/pcm157openalex-snapshot
Polyethylene Glycol (PEG)-Mediated Transient Gene Expression in a Red Alga, Cyanidioschyzon merolae 10D
inferredcites →https://doi.org/10.1101/087969618.39.33openalex-snapshot
2 The Pathway and Mechanism of Initiation of Protein Synthesis
inferredcites →https://doi.org/10.1101/gad.1397906openalex-snapshot
Specific functional interactions of nucleotides at key - 3 and + 4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex
inferredcites →https://doi.org/10.1104/pp.110.171330openalex-snapshot
Expression of Antibody Fragments with a ControlledN-Glycosylation Pattern and Induction of Endoplasmic Reticulum-Derived Vesicles in Seeds of Arabidopsis
inferredcites →https://doi.org/10.1104/pp.126.4.1630openalex-snapshot
Sequence Architecture Downstream of the Initiator Codon Enhances Gene Expression and Protein Stability in Plants
inferredcites →https://doi.org/10.1111/j.1467-7652.2006.00200.xopenalex-snapshot
A KDEL‐tagged monoclonal antibody is efficiently retained in the endoplasmic reticulum in leaves, but is both partially secreted and sorted to protein storage vacuoles in seeds
inferredcites →https://doi.org/10.1111/j.1467-7652.2006.00216.xopenalex-snapshot
Approaches to achieve high‐level heterologous protein production in plants
inferredcites →https://doi.org/10.1111/j.1467-7652.2007.00263.xopenalex-snapshot
Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system
inferredcites →https://doi.org/10.1111/j.1467-7652.2007.00306.xopenalex-snapshot
Recombinant antibody 2G12 produced in maize endosperm efficiently neutralizes HIV‐1 and contains predominantly single‐GlcNAc N ‐glycans
inferredcites →https://doi.org/10.1111/j.1467-7652.2009.00494.xopenalex-snapshot
Production of antibodies in plants: status after twenty years
inferredcites →https://doi.org/10.1111/j.1467-7652.2010.00507.xopenalex-snapshot
Plant‐made vaccines for humans and animals
inferredcites →https://doi.org/10.1186/1471-2164-11-386openalex-snapshot
Identification of scaffold/Matrix Attachment (S/MAR) like DNA element from the gastrointestinal protozoan parasite Giardia lamblia
inferredcites →https://doi.org/10.1186/1471-2199-8-100openalex-snapshot
Translation initiation region sequence preferences in Escherichia coli
inferredcites →https://doi.org/10.1186/1472-6750-9-26openalex-snapshot
Accumulation and processing of a recombinant protein designed as a cleavable fusion to the endogenous Rubisco LSU protein in Chlamydomonas chloroplast
inferredcites →https://doi.org/10.1186/1472-6750-9-36openalex-snapshot
Gene Composer: database software for protein construct design, codon engineering, and gene synthesis
inferredcites →https://doi.org/10.1186/1746-4811-9-39openalex-snapshot
Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system
inferredcites →https://doi.org/10.1186/1756-0500-3-87openalex-snapshot
RCDI/eRCDI: a web-server to estimate codon usage deoptimization
inferredcites →https://doi.org/10.1273/cbij.4.142openalex-snapshot
High performance system for signal peptide prediction: SOSUIsignal
inferredcites →https://doi.org/10.1371/journal.pcbi.0020021openalex-snapshot
Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pcbi.1000213openalex-snapshot
Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks
inferredcites →https://doi.org/10.1371/journal.pone.0062784openalex-snapshot
MAR Elements and Transposons for Improved Transgene Integration and Expression
inferredcites →https://doi.org/10.1371/journal.pone.0079262openalex-snapshot
Molecular Characterization of a Human Matrix Attachment Region Epigenetic Regulator
inferredcites →https://doi.org/10.1385/mb:30:3:185openalex-snapshot
Expression of Foreign Genes in Dunaliella by Electroporation
inferredcites →https://doi.org/10.1387/ijdb.123514smopenalex-snapshot
KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins
inferredcites →https://doi.org/10.18388/abp.2001_3898openalex-snapshot
Effect of nuclear matrix attachment regions on transgene expression in tobacco plants.
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.5772/56335openalex-snapshot
Gene Targeting and Genetic Transformation of Plants
inferredcites →https://doi.org/10.5860/choice.35-0264openalex-snapshot
The cell: a molecular approach
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.