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Exact calculation of the joint allele frequency spectrum for isolation with migration models

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/tpbi.1996.0018openalex-snapshot

Distinguishing Migration from Isolation Using the Variance of Pairwise Differences

inferredcites →https://doi.org/10.1007/978-1-4612-1986-6_8openalex-snapshot

Efficient Management of Parallelism in Object-Oriented Numerical Software Libraries

inferredcites →https://doi.org/10.1007/978-1-4613-0931-4_4openalex-snapshot

Historical Biogeography of the Drosophila melanogaster Species Subgroup

inferredcites →https://doi.org/10.1007/978-1-4684-9455-6_4openalex-snapshot

Properties of Markov Chains

inferredcites →https://doi.org/10.1007/s00285-013-0671-9openalex-snapshot

Efficient computation in the IM model

inferredcites →https://doi.org/10.1016/0168-9525(88)90098-4openalex-snapshot

Genetic variation of Drosophila melanogaster natural populations

inferredcites →https://doi.org/10.1016/j.tpb.2011.02.003openalex-snapshot

Non-equilibrium allele frequency spectra via spectral methods

inferredcites →https://doi.org/10.1038/365548a0openalex-snapshot

African and North American populations of Drosophila melanogaster are very different at the DNA level

inferredcites →https://doi.org/10.1038/nature10811openalex-snapshot

The Drosophila melanogaster Genetic Reference Panel

inferredcites →https://doi.org/10.1038/ng.2896openalex-snapshot

The deleterious mutation load is insensitive to recent population history

inferredcites →https://doi.org/10.1038/ng.3559openalex-snapshot

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences

inferredcites →https://doi.org/10.1038/nrg1112openalex-snapshot

The study of structured populations — new hope for a difficult and divided science

inferredcites →https://doi.org/10.1038/nrg3446openalex-snapshot

Understanding the origin of species with genome-scale data: modelling gene flow

inferredcites →https://doi.org/10.1038/sj.hdy.6800901openalex-snapshot

The recent demographic and adaptive history of Drosophila melanogaster

inferredcites →https://doi.org/10.1073/pnas.0611164104openalex-snapshot

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

inferredcites →https://doi.org/10.1073/pnas.1306223110openalex-snapshot

Gene flow from North Africa contributes to differential human genetic diversity in southern Europe

inferredcites →https://doi.org/10.1080/10618600.2016.1159212openalex-snapshot

Efficient Computation of the Joint Sample Frequency Spectra for Multiple Populations

inferredcites →https://doi.org/10.1093/genetics/145.3.847openalex-snapshot

Estimating Ancestral Population Parameters

inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot

Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach

inferredcites →https://doi.org/10.1093/molbev/msv194openalex-snapshot

The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions

inferredcites →https://doi.org/10.1093/molbev/msv255openalex-snapshot

Computationally Efficient Composite Likelihood Statistics for Demographic Inference

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05131.xopenalex-snapshot

Jaatha: a fast composite-likelihood approach to estimate demographic parameters

inferredcites →https://doi.org/10.1126/science.1227721openalex-snapshot

Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History

inferredcites →https://doi.org/10.1126/science.aab3884openalex-snapshot

Genomic evidence for the Pleistocene and recent population history of Native Americans

inferredcites →https://doi.org/10.1137/1.9780898718881openalex-snapshot

Direct Methods for Sparse Linear Systems

inferredcites →https://doi.org/10.1145/1089014.1089019openalex-snapshot

SLEPc

inferredcites →https://doi.org/10.1214/aoms/1177705693openalex-snapshot

An Optimum Property of Regular Maximum Likelihood Estimation

inferredcites →https://doi.org/10.1371/journal.pbio.0030170openalex-snapshot

A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees

inferredcites →https://doi.org/10.1371/journal.pbio.1001555openalex-snapshot

The Geography of Recent Genetic Ancestry across Europe

inferredcites →https://doi.org/10.1371/journal.pcbi.1004845openalex-snapshot

Deep Learning for Population Genetic Inference

inferredcites →https://doi.org/10.1371/journal.pgen.0020166openalex-snapshot

Inferring the Demographic History and Rate of Adaptive Substitution in Drosophila

inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

inferredcites →https://doi.org/10.1371/journal.pgen.1003080openalex-snapshot

Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture

inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot

Robust Demographic Inference from Genomic and SNP Data

inferredcites →https://doi.org/10.1371/journal.pgen.1004379openalex-snapshot

The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits

inferredcites →https://doi.org/10.1534/genetics.103.024182openalex-snapshot

Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis

inferredcites →https://doi.org/10.1534/genetics.104.030171openalex-snapshot

Maximum-Likelihood Estimation of Demographic Parameters Using the Frequency Spectrum of Unlinked Single-Nucleotide Polymorphisms

inferredcites →https://doi.org/10.1534/genetics.106.058693openalex-snapshot

History and Structure of Sub-Saharan Populations ofDrosophila melanogaster

inferredcites →https://doi.org/10.1534/genetics.112.141846openalex-snapshot

Demographic Inference Using Spectral Methods on SNP Data, with an Analysis of the Human Out-of-Africa Expansion

inferredcites →https://doi.org/10.1534/genetics.112.145912openalex-snapshot

Demographic Inference Reveals African and European Admixture in the North AmericanDrosophila melanogasterPopulation

inferredcites →https://doi.org/10.1534/genetics.113.151670openalex-snapshot

Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster

inferredcites →https://doi.org/10.1534/genetics.114.166454openalex-snapshot

How Population Growth Affects Linkage Disequilibrium

inferredcites →https://doi.org/10.1534/genetics.115.174664openalex-snapshot

The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population

inferredcites →https://doi.org/10.2172/1255238openalex-snapshot

PETSc Users Manual Revision 3.7

inferredcites →https://doi.org/10.5860/choice.35-1575openalex-snapshot

Modern software tools for scientific computing

inferredcites →https://doi.org/10.82444/warw.33615778openalex-snapshot

An overview of composite likelihood methods

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/13836_2017_1openalex-snapshot

Inferring Demographic History Using Genomic Data

inferred← citeshttps://doi.org/10.1111/mec.16496openalex-snapshot

Effects of the neo‐X chromosome on genomic signatures of hybridization inRumex hastatulus

inferred← citeshttps://doi.org/10.22541/au.170670560.08736123/v1openalex-snapshot

Transcriptome data identifies signatures of divergence and gene flow in pine trees (Pinaceae)

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