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Understanding How Microbiomes Influence The Systems They Inhabit: Moving From A Correlative To A Causal Research Framework

https://doi.org/10.1101/065128
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00167161openalex-snapshot
Elemental ratios and the uptake and release of nutrients by phytoplankton and bacteria in three lakes of the Canadian shield
inferredcites →https://doi.org/10.1007/bf00175072openalex-snapshot
Regulation of planktonic bacterial growth rates: The effects of temperature and resources
inferredcites →https://doi.org/10.1021/acs.jpca.5b05889openalex-snapshot
Simulation of the Elastic and Ultimate Tensile Properties of Diamond, Graphene, Carbon Nanotubes, and Amorphous Carbon Using a Revised ReaxFF Parametrization
inferredcites →https://doi.org/10.1038/ismej.2009.88openalex-snapshot
What is microbial community ecology?
inferredcites →https://doi.org/10.1038/ismej.2010.75openalex-snapshot
A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland
inferredcites →https://doi.org/10.1038/nature23273openalex-snapshot
Higher-order interactions stabilize dynamics in competitive network models
inferredcites →https://doi.org/10.1038/ncomms2049openalex-snapshot
Evidence for methane production by saprotrophic fungi
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.198openalex-snapshot
Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.48openalex-snapshot
A new view of the tree of life
inferredcites →https://doi.org/10.1038/nrmicro1341openalex-snapshot
Microbial biogeography: putting microorganisms on the map
inferredcites →https://doi.org/10.1038/nrmicro2504openalex-snapshot
Microbial seed banks: the ecological and evolutionary implications of dormancy
inferredcites →https://doi.org/10.1038/s41559-018-0519-1openalex-snapshot
Function and functional redundancy in microbial systems
inferredcites →https://doi.org/10.1086/283370openalex-snapshot
A Comment on the Use of the Term Emergent Properties
inferredcites →https://doi.org/10.1111/geb.12356openalex-snapshot
The quality of organic matter shapes the functional biogeography of bacterioplankton across boreal freshwater ecosystems
inferredcites →https://doi.org/10.1111/j.1365-2486.2011.02615.xopenalex-snapshot
The M ichaelis– M enten kinetics of soil extracellular enzymes in response to temperature: a cross‐latitudinal study
inferredcites →https://doi.org/10.1126/science.1159792openalex-snapshot
The Global Stoichiometry of Litter Nitrogen Mineralization
inferredcites →https://doi.org/10.1126/science.aac9323openalex-snapshot
Microbiomes in light of traits: A phylogenetic perspective
inferredcites →https://doi.org/10.1128/aem.61.4.1357-1362.1995openalex-snapshot
Light element analysis of individual bacteria by x-ray microanalysis
inferredcites →https://doi.org/10.1128/aem.69.9.5443-5452.2003openalex-snapshot
Effects of Current Velocity on the Nascent Architecture of Stream Microbial Biofilms
inferredcites →https://doi.org/10.1128/mmbr.00001-15openalex-snapshot
Fungal Traits That Drive Ecosystem Dynamics on Land
inferredcites →https://doi.org/10.1146/annurev.micro.091208.073233openalex-snapshot
Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging
inferredcites →https://doi.org/10.1890/11-1745.1openalex-snapshot
Mapping the niche space of soil microorganisms using taxonomy and traits
inferredcites →https://doi.org/10.3354/ame01838openalex-snapshot
Isolates as models to study bacterial ecophysiology and biogeochemistry
inferredcites →https://doi.org/10.3389/fmicb.2013.00112openalex-snapshot
Links between metabolic plasticity and functional redundancy in freshwater bacterioplankton communities
inferredcites →https://doi.org/10.3389/fmicb.2014.00082openalex-snapshot
Metacommunity dynamics of bacteria in an arctic lake: the impact of species sorting and mass effects on bacterial production and biogeography
inferredcites →https://doi.org/10.3389/fmicb.2014.00614openalex-snapshot
Seeing the forest for the genes: using metagenomics to infer the aggregated traits of microbial communities
inferredcites →https://doi.org/10.4319/lo.1987.32.6.1239openalex-snapshot
Regulation of gross growth efficiency and ammonium regeneration in bacteria by substrate C: N ratio1
inferredcites →https://doi.org/10.4319/lo.2009.54.3.0880openalex-snapshot
The effect of temperature on the coupling between phosphorus and growth in lacustrine bacterioplankton communities

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/lno.11251openalex-snapshot
Subtle biogeochemical regimes in the Indian Ocean revealed by spatial and diel frequency of Prochlorococcus haplotypes
inferred← citeshttps://doi.org/10.1007/s10533-018-0460-zopenalex-snapshot
Small differences in ombrotrophy control regional-scale variation in methane cycling among Sphagnum-dominated peatlands
inferred← citeshttps://doi.org/10.1016/j.apsoil.2019.103424openalex-snapshot
Soil microbial activity is resistant to recreational camping disturbance in a Prosopis dominated semiarid savanna
inferred← citeshttps://doi.org/10.1038/s41559-017-0367-4openalex-snapshot
A test of the hierarchical model of litter decomposition
inferred← citeshttps://doi.org/10.1071/mav39n1openalex-snapshot
Volume 39 Number 1
inferred← citeshttps://doi.org/10.1128/msphere.00189-17openalex-snapshot
Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder
inferred← citeshttps://doi.org/10.21518/2079-701x-2018-14-56-60openalex-snapshot
Probiotics: a new or an old concept?
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