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High-Quality Assembly of an Individual of Yoruban Descent

https://doi.org/10.1101/067447
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00412-010-0263-zopenalex-snapshot
Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution
inferredcites →https://doi.org/10.1016/j.ajhg.2012.02.013openalex-snapshot
Resolving the Breakpoints of the 17q21.31 Microdeletion Syndrome with Next-Generation Sequencing
inferredcites →https://doi.org/10.1016/j.ajhg.2013.03.004openalex-snapshot
Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number Variation
inferredcites →https://doi.org/10.1016/j.cell.2012.03.033openalex-snapshot
Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication
inferredcites →https://doi.org/10.1038/gene.2014.56openalex-snapshot
Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity
inferredcites →https://doi.org/10.1038/nature03062openalex-snapshot
Shotgun sequence assembly and recent segmental duplications within the human genome
inferredcites →https://doi.org/10.1038/nature13907openalex-snapshot
Resolving the complexity of the human genome using single-molecule sequencing
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
inferredcites →https://doi.org/10.1038/nbt.3432openalex-snapshot
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
inferredcites →https://doi.org/10.1038/ncomms12065openalex-snapshot
Long-read sequencing and de novo assembly of a Chinese genome
inferredcites →https://doi.org/10.1038/ng.1028openalex-snapshot
De novo assembly and genotyping of variants using colored de Bruijn graphs
inferredcites →https://doi.org/10.1038/ng.2335openalex-snapshot
Structural diversity and African origin of the 17q21.31 inversion polymorphism
inferredcites →https://doi.org/10.1038/ng.3120openalex-snapshot
Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability
inferredcites →https://doi.org/10.1038/ng.3121openalex-snapshot
Comprehensive variation discovery in single human genomes
inferredcites →https://doi.org/10.1038/ng.3248openalex-snapshot
Susceptibility to tuberculosis is associated with variants in the ASAP1 gene encoding a regulator of dendritic cell migration
inferredcites →https://doi.org/10.1038/ng.3257openalex-snapshot
Improved genome inference in the MHC using a population reference graph
inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
inferredcites →https://doi.org/10.1038/nmeth.3454openalex-snapshot
Assembly and diploid architecture of an individual human genome via single-molecule technologies
inferredcites →https://doi.org/10.1038/nmeth.3865openalex-snapshot
A hybrid approach for de novo human genome sequence assembly and phasing
inferredcites →https://doi.org/10.1038/nmeth.4035openalex-snapshot
Phased diploid genome assembly with single-molecule real-time sequencing
inferredcites →https://doi.org/10.1038/nrg3933openalex-snapshot
Genetic variation and the de novo assembly of human genomes
inferredcites →https://doi.org/10.1073/pnas.0510212103openalex-snapshot
Identification of a genetic cluster influencing memory performance and hippocampal activity in humans
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/bioinformatics/btu756openalex-snapshot
SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips
inferredcites →https://doi.org/10.1093/bioinformatics/btw369openalex-snapshot
Assemblytics: a web analytics tool for the detection of variants from an assembly
inferredcites →https://doi.org/10.1093/hmg/ddp187openalex-snapshot
Characterization of six human disease-associated inversion polymorphisms
inferredcites →https://doi.org/10.1093/nar/gks1164openalex-snapshot
Clone DB: an integrated NCBI resource for clone-associated data
inferredcites →https://doi.org/10.1093/nar/gkv1226openalex-snapshot
Assembly: a resource for assembled genomes at NCBI
inferredcites →https://doi.org/10.1101/gr.180893.114openalex-snapshot
Single haplotype assembly of the human genome from a hydatidiform mole
inferredcites →https://doi.org/10.1126/science.1072047openalex-snapshot
Recent Segmental Duplications in the Human Genome
inferredcites →https://doi.org/10.1126/science.aae0344openalex-snapshot
Long-read sequence assembly of the gorilla genome
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/s12859-015-0663-4openalex-snapshot
Sealer: a scalable gap-closing application for finishing draft genomes
inferredcites →https://doi.org/10.1186/s12859-017-1678-9openalex-snapshot
Coordinates and intervals in graph-based reference genomes
inferredcites →https://doi.org/10.1186/s13059-015-0587-3openalex-snapshot
Extending reference assembly models
inferredcites →https://doi.org/10.1371/journal.pbio.1001091openalex-snapshot
Modernizing Reference Genome Assemblies
inferredcites →https://doi.org/10.1371/journal.pone.0021400openalex-snapshot
Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies
inferredcites →https://doi.org/10.48550/arxiv.1404.5010openalex-snapshot
Mapping to a Reference Genome Structure
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-319-56970-3_8openalex-snapshot
Resolving Multicopy Duplications de novo Using Polyploid Phasing
inferred← citeshttps://doi.org/10.1038/s41435-022-00188-2openalex-snapshot
Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation
inferred← citeshttps://doi.org/10.1038/s41467-018-08148-zopenalex-snapshot
Multi-platform discovery of haplotype-resolved structural variation in human genomes
inferred← citeshttps://doi.org/10.1038/s41576-020-0236-xopenalex-snapshot
Long-read human genome sequencing and its applications
inferred← citeshttps://doi.org/10.1038/s41597-024-03914-9openalex-snapshot
Two high quality chromosome-scale genome assemblies of female and male silver pomfret (Pampus argenteus)
inferred← citeshttps://doi.org/10.1093/bib/bbx147openalex-snapshot
Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz235openalex-snapshot
HLA*LA—HLA typing from linearly projected graph alignments
inferred← citeshttps://doi.org/10.1093/nar/gkae086openalex-snapshot
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles
inferred← citeshttps://doi.org/10.1101/gr.214874.116openalex-snapshot
Direct determination of diploid genome sequences
inferred← citeshttps://doi.org/10.1101/gr.215095.116openalex-snapshot
Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
inferred← citeshttps://doi.org/10.1111/ahg.12364openalex-snapshot
Improved assembly and variant detection of a haploid human genome using single‐molecule, high‐fidelity long reads
inferred← citeshttps://doi.org/10.12688/f1000research.15895.1openalex-snapshot
NovoGraph: Genome graph construction from multiple long-read de novo assemblies
inferred← citeshttps://doi.org/10.12688/f1000research.15895.2openalex-snapshot
NovoGraph: Human genome graph construction from multiple long-read de novo assemblies
inferred← citeshttps://doi.org/10.18297/etd/4146openalex-snapshot
Characterization of the immunoglobulin lambda chain across diverse human populations.
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