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DIABLO - an integrative, multi-omics, multivariate method for multi-group classification
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s11306-009-0185-zopenalex-snapshot
Multivariate paired data analysis: multilevel PLSDA versus OPLSDA
inferredcites →https://doi.org/10.1016/j.cels.2015.12.004openalex-snapshot
The Molecular Signatures Database Hallmark Gene Set Collection
inferredcites →https://doi.org/10.1016/j.immuni.2008.05.012openalex-snapshot
A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
inferredcites →https://doi.org/10.1016/j.tibtech.2015.12.013openalex-snapshot
Trans-Omics: How To Reconstruct Biochemical Networks Across Multiple ‘Omic’ Layers
inferredcites →https://doi.org/10.1038/nmeth.2810openalex-snapshot
Similarity network fusion for aggregating data types on a genomic scale
inferredcites →https://doi.org/10.1038/nrg3868openalex-snapshot
Methods of integrating data to uncover genotype–phenotype interactions
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1093/bib/bbv108openalex-snapshot
Dimension reduction techniques for the integrative analysis of multi-omics data
inferredcites →https://doi.org/10.1093/bioinformatics/btp515openalex-snapshot
integrOmics: an R package to unravel relationships between two omics datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btt014openalex-snapshot
miRCancer: a microRNA–cancer association database constructed by text mining on literature
inferredcites →https://doi.org/10.1093/bioinformatics/btv255openalex-snapshot
FERAL: network-based classifier with application to breast cancer outcome prediction
inferredcites →https://doi.org/10.1093/bioinformatics/btw449openalex-snapshot
TANDEM: a two-stage approach to maximize interpretability of drug response models based on multiple molecular data types
inferredcites →https://doi.org/10.1093/bioinformatics/btx682openalex-snapshot
Unsupervised multiple kernel learning for heterogeneous data integration
inferredcites →https://doi.org/10.1093/biostatistics/kxj037openalex-snapshot
Adjusting batch effects in microarray expression data using empirical Bayes methods
inferredcites →https://doi.org/10.1093/biostatistics/kxp008openalex-snapshot
A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
inferredcites →https://doi.org/10.1093/biostatistics/kxr034openalex-snapshot
Using control genes to correct for unwanted variation in microarray data
inferredcites →https://doi.org/10.1093/biostatistics/kxu001openalex-snapshot
Variable selection for generalized canonical correlation analysis
inferredcites →https://doi.org/10.1093/nar/gki033openalex-snapshot
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
inferredcites →https://doi.org/10.1093/nar/gkv1314openalex-snapshot
DriverDBv2: a database for human cancer driver gene research
inferredcites →https://doi.org/10.1101/gr.1910904openalex-snapshot
Coexpression Analysis of Human Genes Across Many Microarray Data Sets
inferredcites →https://doi.org/10.1111/j.2517-6161.1996.tb02080.xopenalex-snapshot
Regression Shrinkage and Selection Via the Lasso
inferredcites →https://doi.org/10.1161/circulationaha.109.912568openalex-snapshot
Assessing the Role of Circulating, Genetic, and Imaging Biomarkers in Cardiovascular Risk Prediction
inferredcites →https://doi.org/10.1182/blood-2010-01-263855openalex-snapshot
Gene enrichment profiles reveal T-cell development, differentiation, and lineage-specific transcription factors including ZBTB25 as a novel NF-AT repressor
inferredcites →https://doi.org/10.1186/1471-2105-12-253openalex-snapshot
Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
inferredcites →https://doi.org/10.1186/1471-2105-13-325openalex-snapshot
A novel approach for biomarker selection and the integration of repeated measures experiments from two assays
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/1710-1492-10-32openalex-snapshot
Th17/Treg ratio derived using DNA methylation analysis is associated with the late phase asthmatic response
inferredcites →https://doi.org/10.1186/1756-0381-5-19openalex-snapshot
Visualising associations between paired ‘omics’ data sets
inferredcites →https://doi.org/10.1186/1756-0381-6-23openalex-snapshot
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network
inferredcites →https://doi.org/10.1186/s12859-015-0857-9openalex-snapshot
Methods for the integration of multi-omics data: mathematical aspects
inferredcites →https://doi.org/10.1214/12-aoas597openalex-snapshot
Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
inferredcites →https://doi.org/10.1371/journal.pbio.1001301openalex-snapshot
Stitching together Multiple Data Dimensions Reveals Interacting Metabolomic and Transcriptomic Networks That Modulate Cell Regulation
inferredcites →https://doi.org/10.1371/journal.pcbi.1004790openalex-snapshot
Pathway-Based Genomics Prediction using Generalized Elastic Net
inferredcites →https://doi.org/10.1371/journal.pcbi.1005752openalex-snapshot
mixOmics: An R package for ‘omics feature selection and multiple data integration
inferredcites →https://doi.org/10.1371/journal.pone.0064832openalex-snapshot
Passing Messages between Biological Networks to Refine Predicted Interactions
inferredcites →https://doi.org/10.1371/journal.pone.0067907openalex-snapshot
Gene-Metabolite Expression in Blood Can Discriminate Allergen-Induced Isolated Early from Dual Asthmatic Responses
inferredcites →https://doi.org/10.1371/journal.pone.0073074openalex-snapshot
Network and Data Integration for Biomarker Signature Discovery via Network Smoothed T-Statistics
inferredcites →https://doi.org/10.3389/fgene.2017.00084openalex-snapshot
More Is Better: Recent Progress in Multi-Omics Data Integration Methods
inferredcites →https://doi.org/10.7717/peerj.561openalex-snapshot
Removing batch effects for prediction problems with frozen surrogate variable analysis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/asmb.2335openalex-snapshot
Prediction for regularized clusterwise multiblock regression
inferred← citeshttps://doi.org/10.1002/gepi.22605openalex-snapshot
Identifying Disease Associated Multi‐Omics Network With Mixed Graphical Models Based on Markov Random Field Model
inferred← citeshttps://doi.org/10.1007/124_2018_22openalex-snapshot
When the Tree Let Us See the Forest: Systems Biology and Natural Variation Studies in Forest Species
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Protein Interaction Networks: Functional and Statistical Approaches
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Multivariate Analysis of Multiple Datasets: a Practical Guide for Chemical Ecology
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Multi-block PLS discriminant analysis for the joint analysis of metabolomic and epidemiological data
inferred← citeshttps://doi.org/10.1007/s11306-020-01722-xopenalex-snapshot
An integrated omics approach to investigate summer mortality of New Zealand Greenshell™ mussels
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Computational Techniques and Tools for Omics Data Analysis: State-of-the-Art, Challenges, and Future Directions
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Precision under pressure: leveraging interpretable AI and machine learning to predict multifactorial abiotic stress in climate-smart crops
inferred← citeshttps://doi.org/10.1016/bs.coac.2018.06.005openalex-snapshot
Multiomics Data Integration in Time Series Experiments
inferred← citeshttps://doi.org/10.1016/j.cmet.2018.01.005openalex-snapshot
An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans
inferred← citeshttps://doi.org/10.1016/j.ebiom.2019.07.031openalex-snapshot
Gut microbiome and serum metabolome analyses identify molecular biomarkers and altered glutamate metabolism in fibromyalgia
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2023.115424openalex-snapshot
Multi-level assessment of the origin, feeding area and organohalogen contamination on salmon from the Baltic Sea
inferred← citeshttps://doi.org/10.1016/j.foodchem.2019.03.090openalex-snapshot
Integration of proteomics and metabolomics data of early and middle season Hass avocados under heat treatment
inferred← citeshttps://doi.org/10.1016/j.psj.2020.06.017openalex-snapshot
An integrated transcriptomics and metabolomics study of the immune response of newly hatched chicks to the cytosine-phosphate-guanine oligonucleotide stimulation
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.09.159openalex-snapshot
Assessment of the ecotoxicological impact of natural and synthetic β-triketone herbicides on the diversity and activity of the soil bacterial community using omic approaches
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.143466openalex-snapshot
Effects on the liver lipidome of rat offspring prenatally exposed to bisphenol A
inferred← citeshttps://doi.org/10.1016/j.watres.2019.02.058openalex-snapshot
Genome-resolved metagenomics of an autotrophic thiocyanate-remediating microbial bioreactor consortium
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.03.021openalex-snapshot
Estimating gene expression from DNA methylation and copy number variation: A deep learning regression model for multi-omics integration
inferred← citeshttps://doi.org/10.1017/9781108552684.035openalex-snapshot
Blood Biomarkers of Cognitive Health and Neurodegenerative Disease
inferred← citeshttps://doi.org/10.1021/acs.analchem.7b04340openalex-snapshot
Proteomic and Metaproteomic Approaches to Understand Host–Microbe Interactions
inferred← citeshttps://doi.org/10.1038/s41396-021-01076-9openalex-snapshot
Unraveling negative biotic interactions determining soil microbial community assembly and functioning
inferred← citeshttps://doi.org/10.1038/s41467-019-08794-xopenalex-snapshot
Dynamic molecular changes during the first week of human life follow a robust developmental trajectory
inferred← citeshttps://doi.org/10.1038/s41467-025-64328-8openalex-snapshot
Integrative brain omics approach highlights sn-1 lysophosphatidylethanolamine in Alzheimer’s dementia
inferred← citeshttps://doi.org/10.1038/s41598-020-69175-9openalex-snapshot
Domestication-driven changes in plant traits associated with changes in the assembly of the rhizosphere microbiota in tetraploid wheat
inferred← citeshttps://doi.org/10.1039/d1mo00411eopenalex-snapshot
Multi-omics data integration approaches for precision oncology
inferred← citeshttps://doi.org/10.1080/14737159.2023.2254884openalex-snapshot
Reprogramming of lipid metabolism in hepatocellular carcinoma resulting in downregulation of phosphatidylcholines used as potential markers for diagnosis and prediction
inferred← citeshttps://doi.org/10.1080/14789450.2025.2491357openalex-snapshot
Unravelling disease complexity: integrative analysis of multi-omic data in clinical research
inferred← citeshttps://doi.org/10.1080/23808993.2017.1400906openalex-snapshot
The role of blood-based biomarkers in advancing personalized therapy of schizophrenia
inferred← citeshttps://doi.org/10.1093/bib/bbx167openalex-snapshot
Multi-omics integration—a comparison of unsupervised clustering methodologies
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty537openalex-snapshot
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
inferred← citeshttps://doi.org/10.1093/treephys/tpaa111openalex-snapshot
Proteometabolomic characterization of apical bud maturation in Pinus pinaster
inferred← citeshttps://doi.org/10.1097/mib.0000000000001208openalex-snapshot
Integrated Analysis of Biopsies from Inflammatory Bowel Disease Patients Identifies SAA1 as a Link Between Mucosal Microbes with TH17 and TH22 Cells
inferred← citeshttps://doi.org/10.1101/2021.07.15.452499openalex-snapshot
Synaptic decline precedes dopaminergic neuronal loss in human midbrain organoids harboring a triplication of the SNCA gene
inferred← citeshttps://doi.org/10.1111/all.14837openalex-snapshot
Multi‐omics analyses implicate EARS2 in the pathogenesis of atopic dermatitis
inferred← citeshttps://doi.org/10.1111/mec.15935openalex-snapshot
Functional redundancy and specific taxa modulate the contribution of prokaryotic diversity and composition to multifunctionality
inferred← citeshttps://doi.org/10.1111/nph.15802openalex-snapshot
A systems biology view of wood formation in Eucalyptus grandis trees submitted to different potassium and water regimes
inferred← citeshttps://doi.org/10.1128/msystems.00703-23openalex-snapshot
Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model
inferred← citeshttps://doi.org/10.1134/s1062359020100283openalex-snapshot
Multidimensional Statistical Analysis of the Structure of Planktonic and Bottom Communities Inhabiting Mineralized Rivers of the Elton Lake Basin
inferred← citeshttps://doi.org/10.1134/s1995082919040175openalex-snapshot
Analysis of Relations between Communities of Hydrobionts in Saline Rivers by Multidimensional Block Ordination
inferred← citeshttps://doi.org/10.11606/d.45.2020.tde-01092020-164939openalex-snapshot
Integration of heterogeneous data: a multi-omics application
inferred← citeshttps://doi.org/10.1161/jaha.120.018126openalex-snapshot
Identification of Phenotypic Lipidomic Signatures in Response to Long Chain n‐3 Polyunsaturated Fatty Acid Supplementation in Humans
inferred← citeshttps://doi.org/10.1186/s12918-018-0556-zopenalex-snapshot
A computational framework for complex disease stratification from multiple large-scale datasets
inferred← citeshttps://doi.org/10.1186/s12967-019-2073-2openalex-snapshot
Bringing radiomics into a multi-omics framework for a comprehensive genotype–phenotype characterization of oncological diseases
inferred← citeshttps://doi.org/10.1186/s13059-020-1926-6openalex-snapshot
Eleven grand challenges in single-cell data science
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1005752openalex-snapshot
mixOmics: An R package for ‘omics feature selection and multiple data integration
inferred← citeshttps://doi.org/10.1371/journal.ppat.1012036openalex-snapshot
Modulation of nucleotide metabolism by picornaviruses
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Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
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Integrative Analysis of Fecal Metagenomics and Metabolomics in Colorectal Cancer
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Integration and visualisation of clinical-omics datasets for medical knowledge discovery
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Malnourishment affects gene expression along the length of the small intestine
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Computational Oncology in the Multi-Omics Era: State of the Art
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Meta-omics integration approach reveals the effect of soil native microbiome diversity in the performance of inoculant Azospirillum brasilense
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Machine Learning and Integrative Analysis of Biomedical Big Data
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Harnessing Multi-Omics and Predictive Modeling for Climate-Resilient Crop Breeding: From Genomes to Fields
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Structure of the Chemical and Genetic Diversity of the True Lavender over Its Natural Range
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Faculty Opinions recommendation of Dynamic molecular changes during the first week of human life follow a robust developmental trajectory.
inferred← citeshttps://doi.org/10.35885/1684-7318-2019-4-407-418openalex-snapshot
Multidimensional Statistical Analysis of the Structure of Plankton and Bottom Communities of Mineralized Rivers of the Lake Elton Basin
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Logistic regression with sparse common and distinctive covariates
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OmicsMapNet: Transforming omics data to take advantage of Deep Convolutional Neural Network for discovery
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Graph Representation Learning on Tissue-Specific Multi-Omics
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Investigating the mechanisms of ankylosing spondylitis-associated genetic variants
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Extracellular vesicle–derived urinary metabolomes show distinctive changes with breast cancer
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Application de la biologie des systèmes pour l'identification de marqueurs moléculaires des maladies rénales dans les fluides biologiques
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