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Physical model of the genotype-to-phenotype map of proteins

https://doi.org/10.1101/069039
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The interface of protein structure, protein biophysics, and molecular evolution
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Normal Mode Analysis of G-actin
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Protein normal-mode dynamics: Trypsin inhibitor, crambin, ribonuclease and lysozyme
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Constraint theory, vector percolation and glass formation
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The Ribosome as an Optimal Decoder: A Lesson in Molecular Recognition
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Analyses of the Effects of All Ubiquitin Point Mutants on Yeast Growth Rate
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RecA-Mediated Homology Search as a Nearly Optimal Signal Detection System
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A colorful origin for the genetic code: Information theory, statistical mechanics and the emergence of molecular codes
inferredcites →https://doi.org/10.1016/j.sbi.2004.03.001openalex-snapshot
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Coarse-grained normal mode analysis in structural biology
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inferredcites →https://doi.org/10.1016/j.tig.2014.09.009openalex-snapshot
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inferredcites →https://doi.org/10.1016/s0092-8674(02)00741-9openalex-snapshot
The Conformational Plasticity of Protein Kinases
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Structural Mechanisms for Domain Movements in Proteins
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inferredcites →https://doi.org/10.1038/nature09105openalex-snapshot
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inferredcites →https://doi.org/10.1038/nature12294openalex-snapshot
Modulation of allostery by protein intrinsic disorder
inferredcites →https://doi.org/10.1038/nchembio.98openalex-snapshot
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Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
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inferredcites →https://doi.org/10.1073/pnas.1609462113openalex-snapshot
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Application of a Theory of Enzyme Specificity to Protein Synthesis
inferredcites →https://doi.org/10.1093/molbev/msu081openalex-snapshot
A Comprehensive, High-Resolution Map of a Gene’s Fitness Landscape
inferredcites →https://doi.org/10.1098/rsta.2015.0070openalex-snapshot
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Fracton interpretation of vibrational properties of cross-linked polymers, glasses, and irradiated quartz
inferredcites →https://doi.org/10.1103/physrevlett.50.346openalex-snapshot
Characterization of Strange Attractors
inferredcites →https://doi.org/10.1103/physrevx.3.011009openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1179700openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1217405openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1219021openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.286.5438.295openalex-snapshot
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inferredcites →https://doi.org/10.1146/annurev.physchem.58.032806.104449openalex-snapshot
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1073/pnas.1615536114openalex-snapshot
Architecture and coevolution of allosteric materials
inferred← citeshttps://doi.org/10.3390/biom11121793openalex-snapshot
MassGenie: A Transformer-Based Deep Learning Method for Identifying Small Molecules from Their Mass Spectra
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