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Metacoder: An R Package for Visualization and Manipulation of Community Taxonomic Diversity Data
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Outgoing claims: the papers this work cites, builds on, or argues with.
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From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity
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Structure, function and diversity of the healthy human microbiome
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Metagenomic microbial community profiling using unique clade-specific marker genes
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The Ribosomal Database Project (RDP)
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1111/j.2041-210x.2012.00198.xopenalex-snapshot
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
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Towards a unified paradigm for sequence‐based identification of fungi
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Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
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Eukaryotic plankton diversity in the sunlit ocean
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inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
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Populations of a cyprinid fish are self-sustaining despite widespread feminization of males
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells
inferredcites →https://doi.org/10.5281/zenodo.158228openalex-snapshot
grunwaldlab/metacoder_documentation: First documentation release
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Environmental Sources of Bacteria and Genetic Variation in Behavior Influence Host-Associated Microbiota
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Geographic Distribution Pattern Determines Soil Microbial Community Assembly Process in Acanthopanax senticosus Rhizosphere Soil
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The Role of the Western Diet and Oral Microbiota in Parkinson’s Disease
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