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The House Fly Y Chromosome is Young and Minimally Differentiated from its Ancient X Chromosome Partner

https://doi.org/10.1101/073023
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Adult specific expression and induction of cytochrome P450tpr in house flies
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Genetics of Pyrethroid Resistance in a Strain (ALHF) of House Flies (Diptera: Muscidae)
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The distribution of males having XY and XX chromosomes in housefly populations (Diptera: Muscidae) of Turkey
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A jumping sex determining factor in the flyMegaselia scalaris
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Molecular differentiation of the homomorphic sex chromosomes inMegaselia scalaris (Diptera) detected by random DNA probes
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Distribution of heterochromatin on the mitotic chromosomes of Musca domestica L. in relation to the activity of male-determining factors
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Autosomal genetic maps of the Australian Sheep Blowfly,Lucilia cuprina dorsalisR.-D. (Diptera: Calliphoridae), and possible correlations with the linkage maps ofMusca domesticaL. andDrosophila melanogaster(Mg.)
inferredcites →https://doi.org/10.1017/s0016672300021790openalex-snapshot
Identification of a male determinant on the X chromosome of housefly (Musca domestica L.) populations in South-East England
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A Study of Factors Affecting the Efficiency of Electrofusion of Enucleated Eggs and Cells-Donors of Nuclei
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Enigma of Y chromosome degeneration: Neo-Y and Neo-X chromosomes of Drosophila miranda a model for sex chromosome evolution
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Autosome and Sex Chromosome Diversity Among the African Pygmy Mice, Subgenus Nannomys (Murinae; Mus)
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Low variability in a Y-linked plant gene and its implications for Y-chromosome evolution
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A primitive Y chromosome in papaya marks incipient sex chromosome evolution
inferredcites →https://doi.org/10.1038/nature06330openalex-snapshot
Demasculinization of X chromosomes in the Drosophila genus
inferredcites →https://doi.org/10.1038/nature07463openalex-snapshot
Low conservation of gene content in the Drosophila Y chromosome
inferredcites →https://doi.org/10.1038/nature12235openalex-snapshot
Reversal of an ancient sex chromosome to an autosome in Drosophila
inferredcites →https://doi.org/10.1038/nrg1914openalex-snapshot
Evolution on the X chromosome: unusual patterns and processes
inferredcites →https://doi.org/10.1038/nrg2948openalex-snapshot
Sex-chromosome evolution: recent progress and the influence of male and female heterogamety
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Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration
inferredcites →https://doi.org/10.1038/sj.hdy.6800697openalex-snapshot
Steps in the evolution of heteromorphic sex chromosomes
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Multiple independent origins of sex chromosomes in amniotes
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Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution
inferredcites →https://doi.org/10.1073/pnas.1421951112openalex-snapshot
Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster
inferredcites →https://doi.org/10.1073/pnas.1505291112openalex-snapshot
Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis
inferredcites →https://doi.org/10.1073/pnas.1525164113openalex-snapshot
Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes
inferredcites →https://doi.org/10.1073/pnas.86.6.1944openalex-snapshot
Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster.
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The Relative Rates of Evolution of Sex Chromosomes and Autosomes
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The Evolution of Sex Determination
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Evolution in the Genus Drosophila
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Fast and accurate short read alignment with Burrows–Wheeler transform
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STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/gbe/evv123openalex-snapshot
Comparative Analysis of the Shared Sex-Determination Region (SDR) among Salmonid Fishes
inferredcites →https://doi.org/10.1093/gbe/evv128openalex-snapshot
Transcriptome Differences between Alternative Sex Determining Genotypes in the House Fly, Musca domestica
inferredcites →https://doi.org/10.1093/genetics/150.2.651openalex-snapshot
The Male-Determining Activity on the Y Chromosome of the Housefly (Musca domestica L.) Consists of Separable Elements
inferredcites →https://doi.org/10.1093/genetics/155.2.685openalex-snapshot
Effect of Inversion Polymorphism on the Neutral Nucleotide Variability of Linked Chromosomal Regions in Drosophila
inferredcites →https://doi.org/10.1093/genetics/20.4.366openalex-snapshot
THE Y CHROMOSOME OF DROSOPHILA PSEUDOOBSCURA
inferredcites →https://doi.org/10.1093/genetics/57.3.729openalex-snapshot
LINKAGE GROUP—KARYOTYPE CORRELATION IN THE HOUSE FLY DETERMINED BY CYTOLOGICAL ANALYSIS OF X-RAY INDUCED TRANSLOCATIONS
inferredcites →https://doi.org/10.1093/jee/78.2.316openalex-snapshot
Rapid Development of High-level Permethrin Resistance in a Field-collected Strain of the House Fly (Diptera: Muscidae) Under Laboratory Selection
inferredcites →https://doi.org/10.1093/jee/98.1.171openalex-snapshot
A Cline in Frequency of Autosomal Males Is Not Associated with Insecticide Resistance in House Fly (Diptera: Muscidae)
inferredcites →https://doi.org/10.1093/molbev/msq045openalex-snapshot
Translocation of Y-Linked Genes to the Dot Chromosome in Drosophila pseudoobscura
inferredcites →https://doi.org/10.1093/molbev/msu101openalex-snapshot
Old but Not (So) Degenerated—Slow Evolution of Largely Homomorphic Sex Chromosomes in Ratites
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a107109openalex-snapshot
REINVESTIGATION OF KARYOTYPE IN DROSOPHILA AFFINIS STURTEVANT AND RELATED SPECIES
inferredcites →https://doi.org/10.1098/rspb.1987.0066openalex-snapshot
On the evolution of sex determination
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.132100.111openalex-snapshot
Disentangling the relationship between sex-biased gene expression and X-linkage
inferredcites →https://doi.org/10.1101/gr.156034.113openalex-snapshot
Efficient identification of Y chromosome sequences in the human and Drosophila genomes
inferredcites →https://doi.org/10.1101/gr.578503openalex-snapshot
Comparative Genome Analysis of the Primary Sex-Determining Locus in Salmonid Fishes
inferredcites →https://doi.org/10.1111/j.1365-2583.2010.01016.xopenalex-snapshot
A microsatellite marker linkage map of the housefly, Musca domestica : evidence for male recombination
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb00346.xopenalex-snapshot
SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM
inferredcites →https://doi.org/10.1126/science.1101675openalex-snapshot
Y Chromosome of D. pseudoobscura Is Not Homologous to the Ancestral Drosophila Y
inferredcites →https://doi.org/10.1126/science.1107295openalex-snapshot
Recycling the Y Chromosome
inferredcites →https://doi.org/10.1126/science.1139815openalex-snapshot
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
inferredcites →https://doi.org/10.1126/science.1148861openalex-snapshot
Polymorphic Y Chromosomes Harbor Cryptic Variation with Manifold Functional Consequences
inferredcites →https://doi.org/10.1126/science.1998119openalex-snapshot
The Evolution of Sex Chromosomes
inferredcites →https://doi.org/10.1139/g64-042openalex-snapshot
FURTHER DATA ON Y CHROMOSOME TYPES INDROSOPHILA ATHABASCA
inferredcites →https://doi.org/10.1139/g65-073openalex-snapshot
CHROMOSOMES OF CALYPTRATE DIPTERA
inferredcites →https://doi.org/10.1139/g93-068openalex-snapshot
Genetic maps of the sheep blowfly Lucilia cuprina: linkage-group correlations with other dipteran genera
inferredcites →https://doi.org/10.1139/z64-100openalex-snapshot
SOMATIC CHROMOSOMES OF HIGHER DIPTERA: IX. KARYOTYPES OF SOME MUSCID SPECIES
inferredcites →https://doi.org/10.1159/000111764openalex-snapshot
An Evolutionary Witness: the Frog Rana rugosa Underwent Change of Heterogametic Sex from XY Male to ZW Female
inferredcites →https://doi.org/10.1159/000356458openalex-snapshot
Sex Determination in Insects: Variations on a Common Theme
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/s13059-014-0466-3openalex-snapshot
Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-014-0572-2openalex-snapshot
De novo assembly of bacterial transcriptomes from RNA-seq data
inferredcites →https://doi.org/10.1186/s13059-015-0667-4openalex-snapshot
Sex chromosome-to-autosome transposition events counter Y-chromosome gene loss in mammals
inferredcites →https://doi.org/10.1266/jjg.64.373openalex-snapshot
Multifactorial sex determination in natural populations of the housefly (Musca domestica) in Japan.
inferredcites →https://doi.org/10.1371/journal.pbio.1001062openalex-snapshot
Ever-Young Sex Chromosomes in European Tree Frogs
inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot
Sex Determination: Why So Many Ways of Doing It?
inferredcites →https://doi.org/10.1371/journal.pbio.1002078openalex-snapshot
Numerous Transitions of Sex Chromosomes in Diptera
inferredcites →https://doi.org/10.1371/journal.pgen.1000391openalex-snapshot
Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)
inferredcites →https://doi.org/10.1371/journal.pgen.1001121openalex-snapshot
Comparative Genomic Hybridization (CGH) Reveals a Neo-X Chromosome and Biased Gene Movement in Stalk-Eyed Flies (Genus Teleopsis)
inferredcites →https://doi.org/10.1371/journal.pone.0141544openalex-snapshot
Dosage Compensation of X-Linked Muller Element F Genes but Not X-Linked Transgenes in the Australian Sheep Blowfly
inferredcites →https://doi.org/10.1387/ijdb.11902690openalex-snapshot
Musca domestica, a window on the evolution of sex-determining mechanisms in insects
inferredcites →https://doi.org/10.1534/g3.114.014795openalex-snapshot
The Evolving Puzzle of Autosomal Versus Y-linked Male Determination in Musca domestica
inferredcites →https://doi.org/10.1534/genetics.107.086074openalex-snapshot
Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps
inferredcites →https://doi.org/10.1534/genetics.110.116129openalex-snapshot
Evolution of a Distinct Genomic Domain in Drosophila: Comparative Analysis of the Dot Chromosome in Drosophila melanogaster and Drosophila virilis
inferredcites →https://doi.org/10.18637/jss.v032.i06openalex-snapshot
mixtools : An R Package for Analyzing Finite Mixture Models
inferredcites →https://doi.org/10.2307/1312947openalex-snapshot
Evolution of the Y Sex Chromosome in Animals
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/jeb.14074openalex-snapshot
Ecology and the evolution of sex chromosomes
inferred← citeshttps://doi.org/10.1111/nph.16002openalex-snapshot
Young sex chromosomes in plants and animals
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