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Use of whole-genome sequencing in the epidemiology of Campylobacter jejuni infections: state-of-knowledge

https://doi.org/10.1101/078550
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s10096-012-1556-3openalex-snapshot
Lipooligosaccharide locus classes are associated with certain Campylobacter jejuni multilocus sequence types
inferredcites →https://doi.org/10.1016/b978-0-12-386454-3.00563-7openalex-snapshot
European Food Safety Authority (EFSA)
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2007.01.006openalex-snapshot
Campylobacters as zoonotic pathogens: A food production perspective
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2016.03.009openalex-snapshot
Tracing isolates from domestic human Campylobacter jejuni infections to chicken slaughter batches and swimming water using whole-genome multilocus sequence typing
inferredcites →https://doi.org/10.1016/j.meegid.2009.09.003openalex-snapshot
Assigning the source of human campylobacteriosis in New Zealand: A comparative genetic and epidemiological approach
inferredcites →https://doi.org/10.1016/j.meegid.2013.03.009openalex-snapshot
Genetic heterogeneity of Campylobacter jejuni NCTC 11168 upon human infection
inferredcites →https://doi.org/10.1016/s0140-6736(12)61689-4openalex-snapshot
Disability-adjusted life years (DALYs) for 291 diseases and injuries in 21 regions, 1990–2010: a systematic analysis for the Global Burden of Disease Study 2010
inferredcites →https://doi.org/10.1016/s0140-6736(83)91872-xopenalex-snapshot
NEW SELECTIVE MEDIUM FOR ISOLATION OF CAMPYLOBACTER JEJUNI FROM FAECAL SPECIMENS
inferredcites →https://doi.org/10.1017/s0950268815001466openalex-snapshot
Calling all Campy – how routine investigation and molecular characterization impacts the understanding of campylobacteriosis epidemiology – Alaska, United States, 2004–2013
inferredcites →https://doi.org/10.1017/s0950268816001187openalex-snapshot
A large outbreak ofCampylobacter jejuniinfection in a university college caused by chicken liver pâté, Australia, 2013
inferredcites →https://doi.org/10.1038/35001088openalex-snapshot
The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
inferredcites →https://doi.org/10.1038/ismej.2015.149openalex-snapshot
Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections
inferredcites →https://doi.org/10.1038/nrg3226openalex-snapshot
Transforming clinical microbiology with bacterial genome sequencing
inferredcites →https://doi.org/10.1038/srep17300openalex-snapshot
Comparative genomics and genome biology of invasive Campylobacter jejuni
inferredcites →https://doi.org/10.1046/j.1472-765x.1999.00658.xopenalex-snapshot
Development of a m-PCR assay for simultaneous identification of Campylobacter jejuni and C. coli
inferredcites →https://doi.org/10.1056/nejmoa1109910openalex-snapshot
Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak
inferredcites →https://doi.org/10.1073/pnas.0409727102openalex-snapshot
Genomic insights that advance the species definition for prokaryotes
inferredcites →https://doi.org/10.1073/pnas.0503252102openalex-snapshot
Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source
inferredcites →https://doi.org/10.1073/pnas.1305559110openalex-snapshot
Genome-wide association study identifies vitamin B 5 biosynthesis as a host specificity factor in Campylobacter
inferredcites →https://doi.org/10.1073/pnas.1605869113openalex-snapshot
Point mutations in the major outer membrane protein drive hypervirulence of a rapidly expanding clone of Campylobacter jejuni
inferredcites →https://doi.org/10.1080/10408410802636017openalex-snapshot
Immunity to Campylobacter: its role in risk assessment and epidemiology
inferredcites →https://doi.org/10.1086/597417openalex-snapshot
Attribution ofCampylobacterInfections in Northeast Scotland to Specific Sources by Use of Multilocus Sequence Typing
inferredcites →https://doi.org/10.1089/fpd.2008.0208openalex-snapshot
Attributing the Human Disease Burden of Foodborne Infections to Specific Sources
inferredcites →https://doi.org/10.1093/gbe/evu194openalex-snapshot
Evolution and Comparative Genomics of Campylobacter jejuni ST-677 Clonal Complex
inferredcites →https://doi.org/10.1093/nar/gks246openalex-snapshot
Phase variable genes of Campylobacter jejuni exhibit high mutation rates and specific mutational patterns but mutability is not the major determinant of population structure during host colonization
inferredcites →https://doi.org/10.1099/ijs.0.64109-0openalex-snapshot
Genetic relatedness within the genus Campylobacter inferred from rpoB sequences
inferredcites →https://doi.org/10.1099/mgen.0.000075openalex-snapshot
Bayesian identification of bacterial strains from sequencing data
inferredcites →https://doi.org/10.1099/mgen.0.000088openalex-snapshot
Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion
inferredcites →https://doi.org/10.1099/mic.0.057158-0openalex-snapshot
Passage of Campylobacter jejuni through the chicken reservoir or mice promotes phase variation in contingency genes Cj0045 and Cj0170 that strongly associates with colonization and disease in a mouse model
inferredcites →https://doi.org/10.1111/j.0272-4332.2004.00427.xopenalex-snapshot
A Bayesian Approach to Quantify the Contribution of Animal‐Food Sources to Human Salmonellosis
inferredcites →https://doi.org/10.1111/j.1365-2672.2004.02232.xopenalex-snapshot
Diversities and similarities in PFGE profiles of Campylobacter jejuni isolated from migrating birds and humans
inferredcites →https://doi.org/10.1111/j.1365-2672.2011.05100.xopenalex-snapshot
Comparison of Campylobacter jejuni isolates from human, food, veterinary and environmental sources in Iceland using PFGE, MLST and fla-SVR sequencing
inferredcites →https://doi.org/10.1111/j.1469-0691.2004.00983.xopenalex-snapshot
Campylobacter, from obscurity to celebrity
inferredcites →https://doi.org/10.1111/j.1469-0691.2010.03364.xopenalex-snapshot
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: usefulness for taxonomy and epidemiology
inferredcites →https://doi.org/10.1111/j.1469-0691.2011.03468.xopenalex-snapshot
Identification of Campylobacter species and related organisms by matrix assisted laser desorption ionization–time of flight (MALDI-TOF) mass spectrometry
inferredcites →https://doi.org/10.1111/mec.13001openalex-snapshot
Evidence of land‐sea transfer of the zoonotic pathogen Campylobacter to a wildlife marine sentinel species
inferredcites →https://doi.org/10.1128/aem.00546-15openalex-snapshot
Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex
inferredcites →https://doi.org/10.1128/aem.00865-08openalex-snapshot
Multilocus Sequence Typing, Pulsed-Field Gel Electrophoresis, and fla Short Variable Region Typing of Clonal Complexes of Campylobacter jejuni Strains of Human, Bovine, and Poultry Origins in Luxembourg
inferredcites →https://doi.org/10.1128/aem.67.4.1581-1586.2001openalex-snapshot
Genomic Relatedness within Five Common Finnish Campylobacter jejuni Pulsed-Field Gel Electrophoresis Genotypes Studied by Amplified Fragment Length Polymorphism Analysis, Ribotyping, and Serotyping
inferredcites →https://doi.org/10.1128/cmr.00006-15openalex-snapshot
Global Epidemiology of Campylobacter Infection
inferredcites →https://doi.org/10.1128/jcm.00042-08openalex-snapshot
Multilocus Sequence Typing of Campylobacter jejuni Isolates from Humans, Chickens, Raw Milk, and Environmental Water in Quebec, Canada
inferredcites →https://doi.org/10.1128/jcm.00051-15openalex-snapshot
Refinement of Whole-Genome Multilocus Sequence Typing Analysis by Addressing Gene Paralogy
inferredcites →https://doi.org/10.1128/jcm.00066-13openalex-snapshot
Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing
inferredcites →https://doi.org/10.1128/jcm.00931-14openalex-snapshot
Genomic Variation between Campylobacter jejuni Isolates Associated with Milk-Borne-Disease Outbreaks
inferredcites →https://doi.org/10.1128/jcm.01959-14openalex-snapshot
Multilocus Sequence Typing (MLST) and Whole-Genome MLST of Campylobacter jejuni Isolates from Human Infections in Three Districts during a Seasonal Peak in Finland
inferredcites →https://doi.org/10.1128/jcm.25.9.1747-1752.1987openalex-snapshot
Prevalence and characterization of hippurate-negative Campylobacter jejuni in King County, Washington
inferredcites →https://doi.org/10.1128/jcm.33.9.2233-2239.1995openalex-snapshot
Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing
inferredcites →https://doi.org/10.1128/jcm.41.10.4870-4872.2003openalex-snapshot
Temporal and Geographical Distribution and Overlap of Penner Heat-Stable Serotypes and Pulsed-Field Gel Electrophoresis Genotypes of Campylobacter jejuni Isolates Collected from Humans and Chickens in Finland during a Seasonal Peak
inferredcites →https://doi.org/10.1136/bmj.2.6078.9openalex-snapshot
Campylobacter enteritis: a "new" disease.
inferredcites →https://doi.org/10.1186/1471-2105-11-595openalex-snapshot
BIGSdb: Scalable analysis of bacterial genome variation at the population level
inferredcites →https://doi.org/10.1186/1471-2148-8-229openalex-snapshot
Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni
inferredcites →https://doi.org/10.1186/1471-2164-15-768openalex-snapshot
Genome analysis of Campylobacter jejuni strains isolated from a waterborne outbreak
inferredcites →https://doi.org/10.1186/1471-2164-8-162openalex-snapshot
Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence
inferredcites →https://doi.org/10.1186/1471-2180-10-200openalex-snapshot
Multilocus sequence types of Finnish bovine Campylobacter jejuni isolates and their attribution to human infections
inferredcites →https://doi.org/10.1186/1476-072x-9-48openalex-snapshot
Analysis of simultaneous space-time clusters of Campylobacter spp. in humans and in broiler flocks using a multiple dataset approach
inferredcites →https://doi.org/10.1186/s12864-015-2087-yopenalex-snapshot
Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni
inferredcites →https://doi.org/10.1371/journal.pone.0016399openalex-snapshot
Standing Genetic Variation in Contingency Loci Drives the Rapid Adaptation of Campylobacter jejuni to a Novel Host
inferredcites →https://doi.org/10.1371/journal.pone.0027121openalex-snapshot
Whole-Genome Comparison of Two Campylobacter jejuni Isolates of the Same Sequence Type Reveals Multiple Loci of Different Ancestral Lineage
inferredcites →https://doi.org/10.1371/journal.pone.0088229openalex-snapshot
Comparative Variation within the Genome of Campylobacter jejuni NCTC 11168 in Human and Murine Hosts
inferredcites →https://doi.org/10.1371/journal.pone.0116585openalex-snapshot
Predominant Campylobacter jejuni Sequence Types Persist in Finnish Chicken Production
inferredcites →https://doi.org/10.1371/journal.ppat.1002824openalex-snapshot
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
inferredcites →https://doi.org/10.2903/sp.efsa.2015.en-743openalex-snapshot
EFSA's 20th Scientific Colloquium on Whole Genome Sequencing of food‐borne pathogens for public health protection
inferredcites →https://doi.org/10.3389/fcimb.2012.00057openalex-snapshot
A Framework for Assessing the Concordance of Molecular Typing Methods and the True Strain Phylogeny of Campylobacter jejuni and C. coli Using Draft Genome Sequence Data
inferredcites →https://doi.org/10.3390/genes3020261openalex-snapshot
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1128/jcm.00771-20openalex-snapshot
Comparison of Molecular Subtyping and Antimicrobial Resistance Detection Methods Used in a Large Multistate Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Linked to Pet Store Puppies
inferred← citeshttps://doi.org/10.1177/1176934319868469openalex-snapshot
Draft Genome Sequence of Ciprofloxacin and Ceftriaxone Resistant Campylobacter jejuni MM26-781 Assigned to Novel ST Isolated From Common Pigeon in Lithuania
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