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SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON

https://doi.org/10.1101/081927

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Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/hipo.22559openalex-snapshot

Target‐selectivity of parvalbumin‐positive interneurons in layer II of medial entorhinal cortex in normal and epileptic animals

inferredcites →https://doi.org/10.1016/j.jneumeth.2007.09.010openalex-snapshot

Translating network models to parallel hardware in NEURON

inferredcites →https://doi.org/10.1016/j.neuron.2007.03.025openalex-snapshot

neuroConstruct: A Tool for Modeling Networks of Neurons in 3D Space

inferredcites →https://doi.org/10.1017/cbo9780511541612openalex-snapshot

The NEURON Book

inferredcites →https://doi.org/10.1038/467775aopenalex-snapshot

Computational science: ...Error

inferredcites →https://doi.org/10.1038/nn.3838openalex-snapshot

Big data from small data: data-sharing in the 'long tail' of neuroscience

inferredcites →https://doi.org/10.1038/nn.4255openalex-snapshot

Conceptual and technical advances define a key moment for theoretical neuroscience

inferredcites →https://doi.org/10.1038/nn891openalex-snapshot

Pharmacological upregulation of h-channels reduces the excitability of pyramidal neuron dendrites

inferredcites →https://doi.org/10.1038/nrn3578openalex-snapshot

Neuroscience thinks big (and collaboratively)

inferredcites →https://doi.org/10.1109/4233.788587openalex-snapshot

Neuroinformatics as a megascience issue

inferredcites →https://doi.org/10.1109/mcse.2012.41openalex-snapshot

Automated Capture of Experiment Context for Easier Reproducibility in Computational Research

inferredcites →https://doi.org/10.1109/tbme.2016.2539602openalex-snapshot

Reproducibility in Computational Neuroscience Models and Simulations

inferredcites →https://doi.org/10.1371/journal.pcbi.1000815openalex-snapshot

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail

inferredcites →https://doi.org/10.1385/ni:1:1:001openalex-snapshot

An Information Science Infrastructure for Neuroscience

inferredcites →https://doi.org/10.3389/fninf.2012.00020openalex-snapshot

Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON

inferredcites →https://doi.org/10.3389/fninf.2013.00044openalex-snapshot

An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook

inferredcites →https://doi.org/10.3389/fninf.2014.00040openalex-snapshot

NeuroElectro: a window to the world's neuron electrophysiology data

inferredcites →https://doi.org/10.6080/k05h7d60openalex-snapshot

Simulation results from full scale and rationally reduced network models of the isolated hippocampal CA1 subfield in rat

inferredcites →https://doi.org/10.7554/elife.18566openalex-snapshot

Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/hipo.23364openalex-snapshot

Linking minimal and detailed models of CA1 microcircuits reveals how theta rhythms emerge and their frequencies controlled

inferred← citeshttps://doi.org/10.1101/2021.11.02.466940openalex-snapshot

Towards a general framework for modeling large-scale biophysical neuronal networks: a full-scale computational model of the rat dentate gyrus

inferred← citeshttps://doi.org/10.1101/2022.06.01.494440openalex-snapshot

Cholecystokinin-expressing (CCK+) basket cells are key controllers of theta-gamma coupled rhythms in the hippocampus

inferred← citeshttps://doi.org/10.7554/elife.18566openalex-snapshot

Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit

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