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Towards an ontology-based recommender system for relevant bioinformatics workflows

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142727.mb1910s89openalex-snapshot
Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists
inferredcites →https://doi.org/10.1007/11908678_11openalex-snapshot
Ontology-Enhanced Association Mining
inferredcites →https://doi.org/10.1007/978-3-540-24750-0openalex-snapshot
Handbook on Ontologies
inferredcites →https://doi.org/10.1007/978-3-540-70981-7_38openalex-snapshot
Canonical Forms for Frequent Graph Mining
inferredcites →https://doi.org/10.1007/978-3-642-23291-6_4openalex-snapshot
Retrieval of Semantic Workflows with Knowledge Intensive Similarity Measures
inferredcites →https://doi.org/10.1007/978-981-10-7359-5_6openalex-snapshot
A Survey on Relation Extraction
inferredcites →https://doi.org/10.1007/bfb0014140openalex-snapshot
Mining sequential patterns: Generalizations and performance improvements
inferredcites →https://doi.org/10.1007/s10115-011-0386-4openalex-snapshot
Improving pattern quality in web usage mining by using semantic information
inferredcites →https://doi.org/10.1016/0306-4573(88)90021-0openalex-snapshot
Term-weighting approaches in automatic text retrieval
inferredcites →https://doi.org/10.1016/j.future.2006.07.011openalex-snapshot
Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences
inferredcites →https://doi.org/10.1016/j.future.2013.09.018openalex-snapshot
Common motifs in scientific workflows: An empirical analysis
inferredcites →https://doi.org/10.1016/j.future.2015.06.012openalex-snapshot
Effective and efficient similarity search in scientific workflow repositories
inferredcites →https://doi.org/10.1093/bioinformatics/bth227openalex-snapshot
MedPost: a part-of-speech tagger for bioMedical text
inferredcites →https://doi.org/10.1093/bioinformatics/bth361openalex-snapshot
Taverna: a tool for the composition and enactment of bioinformatics workflows
inferredcites →https://doi.org/10.1093/bioinformatics/btt113openalex-snapshot
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
inferredcites →https://doi.org/10.1093/bioinformatics/btt575openalex-snapshot
Robust adjustment of sequence tag abundance
inferredcites →https://doi.org/10.1093/bioinformatics/btu471openalex-snapshot
Extracting patterns of database and software usage from the bioinformatics literature
inferredcites →https://doi.org/10.1093/gbe/evr050openalex-snapshot
Evaluating Phylogenetic Congruence in the Post-Genomic Era
inferredcites →https://doi.org/10.1093/nar/gks1195openalex-snapshot
GenBank
inferredcites →https://doi.org/10.1093/nar/gku1179openalex-snapshot
Gene Ontology Consortium: going forward
inferredcites →https://doi.org/10.1093/nar/gku989openalex-snapshot
UniProt: a hub for protein information
inferredcites →https://doi.org/10.1109/icws.2006.147openalex-snapshot
Workflow discovery: the problem, a case study from e-Science and a graph-based solution
inferredcites →https://doi.org/10.1109/sai.2015.7237199openalex-snapshot
Incorporating semantics in pattern-based scientific workflow recommender systems: Improving the accuracy of recommendations
inferredcites →https://doi.org/10.1109/scc.2010.95openalex-snapshot
Alternative Approaches for Workflow Similarity
inferredcites →https://doi.org/10.1145/1015330.1015376openalex-snapshot
Online and batch learning of pseudo-metrics
inferredcites →https://doi.org/10.1145/1084805.1084814openalex-snapshot
A taxonomy of scientific workflow systems for grid computing
inferredcites →https://doi.org/10.1145/1132960.1132963openalex-snapshot
Interestingness measures for data mining
inferredcites →https://doi.org/10.1145/1229179.1229183openalex-snapshot
Automatic classification of Web queries using very large unlabeled query logs
inferredcites →https://doi.org/10.1145/1822327.1822347openalex-snapshot
A framework for mining meaningful usage patterns within a semantically enhanced web portal
inferredcites →https://doi.org/10.1186/1471-2105-12-1openalex-snapshot
MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
inferredcites →https://doi.org/10.1186/1471-2105-12-s3-s1openalex-snapshot
Building a biomedical tokenizer using the token lattice design pattern and the adapted Viterbi algorithm
inferredcites →https://doi.org/10.1186/1471-2148-13-161openalex-snapshot
State-of the art methodologies dictate new standards for phylogenetic analysis
inferredcites →https://doi.org/10.1186/s12859-015-0508-1openalex-snapshot
Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms
inferredcites →https://doi.org/10.1186/s13062-015-0071-8openalex-snapshot
Experiences with workflows for automating data-intensive bioinformatics
inferredcites →https://doi.org/10.1371/journal.pone.0013575openalex-snapshot
Combining Spatial-Temporal and Phylogenetic Analysis Approaches for Improved Understanding on Global H5N1 Transmission
inferredcites →https://doi.org/10.1371/journal.pone.0029903openalex-snapshot
Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations
inferredcites →https://doi.org/10.1504/ijbra.2007.015003openalex-snapshot
An ontology-based framework for bioinformatics workflows
inferredcites →https://doi.org/10.1561/1500000017openalex-snapshot
Web Crawling
inferredcites →https://doi.org/10.4018/jswis.2007040101openalex-snapshot
Experience in Aligning AnatomicalOntologies
inferredcites →https://doi.org/10.4018/jswis.2007100101openalex-snapshot
Ontology-Based Conceptual Design of ETL Processes for Both Structured and Semi-Structured Data
inferredcites →https://doi.org/10.63317/3wtkaidk6ea8openalex-snapshot
Generating Typed Dependency Parses from Phrase Structure Parses

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.patter.2021.100322openalex-snapshot
The role of metadata in reproducible computational research
inferred← citeshttps://doi.org/10.1109/bibe.2019.00048openalex-snapshot
Enabling Ontology-Based Search: A Case Study in the Bioinformatics Domain
inferred← citeshttps://doi.org/10.5753/sbbd.2018.22232openalex-snapshot
FReeP: towards parameter recommendation in scientific workflows using preference learning
inferred← citeshttps://doi.org/10.7287/peerj-cs.606v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Provenance-and machine learning-based recommendation of parameter values in scientific workflows (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.606v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Provenance-and machine learning-based recommendation of parameter values in scientific workflows (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.606v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Provenance-and machine learning-based recommendation of parameter values in scientific workflows (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.606v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Provenance-and machine learning-based recommendation of parameter values in scientific workflows (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj-cs.606openalex-snapshot
Provenance-and machine learning-based recommendation of parameter values in scientific workflows
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.