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The megabase-sized fungal genome of Rhizoctonia solani assembled from nanopore reads only

https://doi.org/10.1101/084772
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cropro.2003.10.001openalex-snapshot
Safeguarding production—losses in major crops and the role of crop protection
inferredcites →https://doi.org/10.1038/nbt.3238openalex-snapshot
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
inferredcites →https://doi.org/10.1038/nbt.3360openalex-snapshot
De novo sequencing and variant calling with nanopores using PoreSeq
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nmeth.3444openalex-snapshot
A complete bacterial genome assembled de novo using only nanopore sequencing data
inferredcites →https://doi.org/10.1038/nrg.2016.49openalex-snapshot
Coming of age: ten years of next-generation sequencing technologies
inferredcites →https://doi.org/10.1038/srep11996openalex-snapshot
Scaffolding of a bacterial genome using MinION nanopore sequencing
inferredcites →https://doi.org/10.1038/srep28625openalex-snapshot
Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens
inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-snapshot
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
inferredcites →https://doi.org/10.1093/bioinformatics/btr507openalex-snapshot
FLASH: fast length adjustment of short reads to improve genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu555openalex-snapshot
Poretools: a toolkit for analyzing nanopore sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btw152openalex-snapshot
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
inferredcites →https://doi.org/10.1093/gigascience/giw018openalex-snapshot
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
inferredcites →https://doi.org/10.1101/gr.181990.114openalex-snapshot
RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts
inferredcites →https://doi.org/10.1101/gr.191395.115openalex-snapshot
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1371/journal.pone.0157600openalex-snapshot
De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies
inferredcites →https://doi.org/10.5424/sjar/2006041-178openalex-snapshot
Review. Biology and systematics of the form genus Rhizoctonia
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Infection mechanisms of Rhizoctonia cerealis in wheat
inferred← citeshttps://doi.org/10.1007/978-1-0716-0199-0_14openalex-snapshot
Population Genomics of Fungal Plant Pathogens and the Analyses of Rapidly Evolving Genome Compartments
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.11.002openalex-snapshot
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads
inferred← citeshttps://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferred← citeshttps://doi.org/10.1038/s41587-021-01108-xopenalex-snapshot
Nanopore sequencing technology, bioinformatics and applications
inferred← citeshttps://doi.org/10.1038/s41598-017-07650-6openalex-snapshot
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
inferred← citeshttps://doi.org/10.1038/s41598-017-07995-yopenalex-snapshot
A mobile pathogenicity chromosome in Fusarium oxysporum for infection of multiple cucurbit species
inferred← citeshttps://doi.org/10.1038/s41598-017-08461-5openalex-snapshot
Field-based species identification of closely-related plants using real-time nanopore sequencing
inferred← citeshttps://doi.org/10.1038/s43016-020-00197-2openalex-snapshot
A phased Vanilla planifolia genome enables genetic improvement of flavour and production
inferred← citeshttps://doi.org/10.1101/107656openalex-snapshot
Field-based species identification in eukaryotes using real-time nanopore sequencing
inferred← citeshttps://doi.org/10.1101/gr.279334.124openalex-snapshot
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
inferred← citeshttps://doi.org/10.1105/tpc.17.00521openalex-snapshot
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
inferred← citeshttps://doi.org/10.1128/aem.00125-23openalex-snapshot
The Influence of Heteroresistance on Minimum Inhibitory Concentration, Investigated Using Weak-Acid Stress in Food Spoilage Yeasts
inferred← citeshttps://doi.org/10.1242/bio.056010openalex-snapshot
Recent developments of tools for genome and metabolome studies in basidiomycete fungi and their application to natural product research
inferred← citeshttps://doi.org/10.12688/f1000research.12012.2openalex-snapshot
The long reads ahead: de novo genome assembly using the MinION
inferred← citeshttps://doi.org/10.17660/actahortic.2019.1237.3openalex-snapshot
Integrated management of diseases and pests on ornamental geophytes: challenges and progress
inferred← citeshttps://doi.org/10.33540/480openalex-snapshot
Leveraging technological opportunities in cancer genomics
inferred← citeshttps://doi.org/10.3390/microorganisms13081861openalex-snapshot
Why Are Long-Read Sequencing Methods Revolutionizing Microbiome Analysis?
inferred← citeshttps://doi.org/10.70675/0b3fded9z0768z4976z9f7cz8b7e4a9f1114openalex-snapshot
Phylogenomics and comparative genomics in ant-eating mammals
inferred← citeshttps://doi.org/10.7554/elife.63167openalex-snapshot
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox
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