On the public citation graph

Characterizing Xenopus tropicalis endurance capacities with multilevel transcriptomics

https://doi.org/10.1101/091280
0 signed · 81 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cbf.1003openalex-snapshot
Glutamine and glutamate—their central role in cell metabolism and function
inferredcites →https://doi.org/10.1002/dvdy.10178openalex-snapshot
Xenopus, the next generation: X. Tropicalis genetics and genomics
inferredcites →https://doi.org/10.1002/eji.201142125openalex-snapshot
Ankrd17 positively regulates RIG‐I ‐like receptor ( RLR )‐mediated immune signaling
inferredcites →https://doi.org/10.1002/humu.21059openalex-snapshot
Mutations and polymorphisms of the skeletal muscle α-actin gene ( ACTA1 )
inferredcites →https://doi.org/10.1002/jcp.22529openalex-snapshot
The differential impact of PDE4 subtypes in human lung fibroblasts on cytokine‐induced proliferation and myofibroblast conversion
inferredcites →https://doi.org/10.1006/geno.2000.6169openalex-snapshot
Identification of Two Novel Proteins That Interact with Germ-Cell-Specific RNA-Binding Proteins DAZ and DAZL1
inferredcites →https://doi.org/10.1007/bf00007433openalex-snapshot
Diel activity and thermoregulatory behavior of a fully aquatic frog: Xenopus laevis
inferredcites →https://doi.org/10.1007/s00018-006-6016-8openalex-snapshot
The life cycle of neutral lipids: synthesis, storage and degradation
inferredcites →https://doi.org/10.1007/s00335-012-9427-xopenalex-snapshot
The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping
inferredcites →https://doi.org/10.1007/s003600050266openalex-snapshot
Thermal acclimation of locomotor performance in tadpoles and adults of the aquatic frog Xenopus laevis
inferredcites →https://doi.org/10.1016/j.bbalip.2010.07.007openalex-snapshot
Biological effects of propionic acid in humans; metabolism, potential applications and underlying mechanisms
inferredcites →https://doi.org/10.1016/j.ibmb.2015.05.009openalex-snapshot
Comparing de novo and reference-based transcriptome assembly strategies by applying them to the blood-sucking bug Rhodnius prolixus
inferredcites →https://doi.org/10.1016/j.ppees.2007.09.004openalex-snapshot
Predicting global change impacts on plant species’ distributions: Future challenges
inferredcites →https://doi.org/10.1016/j.tibs.2004.09.006openalex-snapshot
The power of two: protein dimerization in biology
inferredcites →https://doi.org/10.1016/j.tree.2006.03.016openalex-snapshot
A future for models and data in environmental science
inferredcites →https://doi.org/10.1016/j.ydbio.2004.04.023openalex-snapshot
Defining a large set of full-length clones from a Xenopus tropicalis EST project
inferredcites →https://doi.org/10.1016/s0006-291x(03)00864-7openalex-snapshot
Mouse MTH2 protein which prevents mutations caused by 8-oxoguanine nucleotides
inferredcites →https://doi.org/10.1038/182064a0openalex-snapshot
Sexually Mature Individuals of Xenopus laevis from the Transplantation of Single Somatic Nuclei
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nature02205openalex-snapshot
Predicting distributions of known and unknown reptile species in Madagascar
inferredcites →https://doi.org/10.1038/nature07509openalex-snapshot
Alternative isoform regulation in human tissue transcriptomes
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/ng1180openalex-snapshot
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrn2672openalex-snapshot
Inside the brain of an elite athlete: the neural processes that support high achievement in sports
inferredcites →https://doi.org/10.1073/pnas.0308661100openalex-snapshot
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
inferredcites →https://doi.org/10.1073/pnas.0506577102openalex-snapshot
Discovering statistically significant pathways in expression profiling studies
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.0801921105openalex-snapshot
Are we in the midst of the sixth mass extinction? A view from the world of amphibians
inferredcites →https://doi.org/10.1073/pnas.1007217108openalex-snapshot
Impacts of climate change on the world's most exceptional ecoregions
inferredcites →https://doi.org/10.1073/pnas.2032324100openalex-snapshot
Protein complexes and functional modules in molecular networks
inferredcites →https://doi.org/10.1074/jbc.m807827200openalex-snapshot
Identification and Functional Analysis of a Novel Cyclin E/Cdk2 Substrate Ankrd17
inferredcites →https://doi.org/10.1085/jgp.46.4.655openalex-snapshot
Effects of Zinc on Responses of Skeletal Muscle
inferredcites →https://doi.org/10.1086/377590openalex-snapshot
ACTN3 Genotype Is Associated with Human Elite Athletic Performance
inferredcites →https://doi.org/10.1086/648567openalex-snapshot
Thermodynamic Effects on Organismal Performance: Is Hotter Better?
inferredcites →https://doi.org/10.1093/bib/bbr049openalex-snapshot
Gene set enrichment analysis: performance evaluation and usage guidelines
inferredcites →https://doi.org/10.1093/bioinformatics/btn161openalex-snapshot
Identifying functional modules in protein–protein interaction networks: an integrated exact approach
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq203openalex-snapshot
Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/nar/gkm826openalex-snapshot
Xenbase: a Xenopus biology and genomics resource
inferredcites →https://doi.org/10.1093/nar/gkn923openalex-snapshot
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
inferredcites →https://doi.org/10.1093/nar/gks1025openalex-snapshot
Xenbase: expansion and updates of the Xenopus model organism database
inferredcites →https://doi.org/10.1093/nar/gkt1140openalex-snapshot
Activities at the Universal Protein Resource (UniProt)
inferredcites →https://doi.org/10.1093/nar/gku1179openalex-snapshot
Gene Ontology Consortium: going forward
inferredcites →https://doi.org/10.1093/oso/9780198548294.001.0001openalex-snapshot
Extinction Rates
inferredcites →https://doi.org/10.1098/rsta.2010.0238openalex-snapshot
Changes in the potential distribution of humid tropical forests on a warmer planet
inferredcites →https://doi.org/10.1098/rstb.2010.0082openalex-snapshot
Building the bridge between animal movement and population dynamics
inferredcites →https://doi.org/10.1098/rstb.2010.0176openalex-snapshot
Personality-dependent dispersal: characterization, ontogeny and consequences for spatially structured populations
inferredcites →https://doi.org/10.1101/gr.133744.111openalex-snapshot
Detecting differential usage of exons from RNA-seq data
inferredcites →https://doi.org/10.1101/gr.141424.112openalex-snapshot
RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development
inferredcites →https://doi.org/10.1101/gr.4871006openalex-snapshot
Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling
inferredcites →https://doi.org/10.1109/mcse.2007.55openalex-snapshot
Matplotlib: A 2D Graphics Environment
inferredcites →https://doi.org/10.1111/j.1461-0248.2005.00814.xopenalex-snapshot
Trends in the state of nature and their implications for human well‐being
inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01250.xopenalex-snapshot
Global change and species interactions in terrestrial ecosystems
inferredcites →https://doi.org/10.1126/science.1103538openalex-snapshot
Status and Trends of Amphibian Declines and Extinctions Worldwide
inferredcites →https://doi.org/10.1152/physiol.00023.2009openalex-snapshot
Regulation of Smooth Muscle Contraction by Small GTPases
inferredcites →https://doi.org/10.1158/1078-0432.ccr-11-0770openalex-snapshot
Gene Set Enrichment Analysis Unveils the Mechanism for the Phosphodiesterase 4B Control of Glucocorticoid Response in B-cell Lymphoma
inferredcites →https://doi.org/10.1159/000130468openalex-snapshot
Karyotype analysis of Xenopus tropicalis Gray, Pipidae
inferredcites →https://doi.org/10.1161/01.atv.0000104012.40720.c4openalex-snapshot
The Role of β-Transducin Repeat-Containing Protein (β-TrCP) in the Regulation of NF-κB in Vascular Smooth Muscle Cells
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2105-14-s15-s16openalex-snapshot
Finishing bacterial genome assemblies with Mix
inferredcites →https://doi.org/10.1186/1471-2105-9-180openalex-snapshot
annot8r: GO, EC and KEGG annotation of EST datasets
inferredcites →https://doi.org/10.1186/1471-2148-11-263openalex-snapshot
Evolutionary view of acyl-CoA diacylglycerol acyltransferase (DGAT), a key enzyme in neutral lipid biosynthesis
inferredcites →https://doi.org/10.1186/1471-2164-15-421openalex-snapshot
Expression-based network biology identifies immune-related functional modules involved in plant defense
inferredcites →https://doi.org/10.1186/1471-2164-6-123openalex-snapshot
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
inferredcites →https://doi.org/10.1186/1471-2164-8-118openalex-snapshot
Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis
inferredcites →https://doi.org/10.1186/1752-0509-6-s3-s7openalex-snapshot
Revealing functionally coherent subsets using a spectral clustering and an information integration approach
inferredcites →https://doi.org/10.1186/gb-2013-14-9-r96openalex-snapshot
An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse
inferredcites →https://doi.org/10.1186/s12859-015-0729-3openalex-snapshot
htsint: a Python library for sequencing pipelines that combines data through gene set generation
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1214/07-aoas101openalex-snapshot
On testing the significance of sets of genes
inferredcites →https://doi.org/10.1242/jeb.072090openalex-snapshot
Trade-offs between burst performance and maximal exertion capacity in a wild amphibian, Xenopus tropicalis
inferredcites →https://doi.org/10.1371/journal.pcbi.1002533openalex-snapshot
Quality of Computationally Inferred Gene Ontology Annotations
inferredcites →https://doi.org/10.2307/1268249openalex-snapshot
Detection of Influential Observation in Linear Regression
inferredcites →https://doi.org/10.2307/1444671openalex-snapshot
Effect of Temperature on Sprint Performance in the Frog Xenopus laevis and the Salamander Necturus maculosus
inferredcites →https://doi.org/10.25080/tcwv9851openalex-snapshot
Exploring Network Structure, Dynamics, and Function using NetworkX
inferredcites →https://doi.org/10.3390/d2020281openalex-snapshot
Direct and Indirect Effects of Climate Change on Amphibian Populations
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.