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Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software

https://doi.org/10.1101/092205
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The anatomy of successful computational biology software
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OMICtools: an informative directory for multi-omic data analysis
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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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Database resources of the National Center for Biotechnology Information
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PROCHECK: a program to check the stereochemical quality of protein structures
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inferredcites →https://doi.org/10.1186/s13059-019-1738-8openalex-snapshot
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-019-09406-4openalex-snapshot
Systematic benchmarking of omics computational tools
inferred← citeshttps://doi.org/10.1038/s41596-024-00986-0openalex-snapshot
Packaging and containerization of computational methods
inferred← citeshttps://doi.org/10.1038/s41596-025-01239-4openalex-snapshot
A workflow for statistical analysis and visualization of microbiome omics data using the R microeco package
inferred← citeshttps://doi.org/10.1101/202077openalex-snapshot
Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies
inferred← citeshttps://doi.org/10.1111/trf.18331openalex-snapshot
Genetic variants in the CD59 gene: An exploratory study of large genome databases
inferred← citeshttps://doi.org/10.1186/s13059-019-1738-8openalex-snapshot
Essential guidelines for computational method benchmarking
inferred← citeshttps://doi.org/10.1186/s13059-021-02365-4openalex-snapshot
On the optimistic performance evaluation of newly introduced bioinformatic methods
inferred← citeshttps://doi.org/10.31219/osf.io/p8yd9openalex-snapshot
Towards reproducible, transparent, and systematic benchmarking of omics computational tools
inferred← citeshttps://doi.org/10.48550/arxiv.1707.03659openalex-snapshot
OMICtools: a community-driven search engine for biological data analysis
inferred← citeshttps://doi.org/10.7250/itms-2020-0005openalex-snapshot
An Overview of the Application of Deep Learning in Short-Read Sequence Classification
inferred← citeshttps://doi.org/10.7287/peerj.6160v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.6160v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.6160v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.6160openalex-snapshot
Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies
inferred← citeshttps://doi.org/10.7717/peerj.9197openalex-snapshot
In silico analysis on the functional and structural impact of Rad50 mutations involved in DNA strand break repair
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.