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Strong and Fluctuating Sequence Constraints Drive Alu_ Evolution

https://doi.org/10.1101/094326
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/mgme.1999.2864openalex-snapshot
Alu Repeats and Human Disease
inferredcites →https://doi.org/10.1007/bf02099850openalex-snapshot
Existence of at least three distinct Alu subfamilies
inferredcites →https://doi.org/10.1007/bf02102862openalex-snapshot
Evolution of the master Alu gene(s)
inferredcites →https://doi.org/10.1016/0168-9525(92)90262-3openalex-snapshot
Master genes in mammalian repetitive DNA amplification
inferredcites →https://doi.org/10.1016/j.coviro.2013.09.002openalex-snapshot
Alu elements: an intrinsic source of human genome instability
inferredcites →https://doi.org/10.1016/j.gene.2005.09.031openalex-snapshot
Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms
inferredcites →https://doi.org/10.1016/j.gene.2012.07.042openalex-snapshot
The impact of transposable elements on eukaryotic genomes: From genome size increase to genetic adaptation to stressful environments
inferredcites →https://doi.org/10.1016/j.mrfmmm.2006.11.021openalex-snapshot
Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity
inferredcites →https://doi.org/10.1016/j.tig.2004.07.012openalex-snapshot
Retrotransposition of Alu elements: how many sources?
inferredcites →https://doi.org/10.1016/j.tig.2006.08.007openalex-snapshot
Alu elements within human mRNAs are probable microRNA targets
inferredcites →https://doi.org/10.1038/ng1223openalex-snapshot
LINE-mediated retrotransposition of marked Alu sequences
inferredcites →https://doi.org/10.1038/nrg798openalex-snapshot
Alu repeats and human genomic diversity
inferredcites →https://doi.org/10.1073/pnas.85.13.4775openalex-snapshot
A fundamental division in the Alu family of repeated sequences.
inferredcites →https://doi.org/10.1093/bioinformatics/bti1018openalex-snapshot
De novo identification of repeat families in large genomes
inferredcites →https://doi.org/10.1093/nar/21.6.1351openalex-snapshot
Proposed roles for DNA methylation inAlutranscriptional repression and mutational inactivation
inferredcites →https://doi.org/10.1093/nar/22.6.1087openalex-snapshot
Alu transcripts: cytoplasmic localisation and regulation by DNA methylation
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040422openalex-snapshot
Clustering and subfamily relationships of the Alu family in the human genome.
inferredcites →https://doi.org/10.1098/rstb.2008.0168openalex-snapshot
The evolution of RNAi as a defence against viruses and transposable elements
inferredcites →https://doi.org/10.1101/gr.081737.108openalex-snapshot
Active Alu retrotransposons in the human genome
inferredcites →https://doi.org/10.1101/gr.089789.108openalex-snapshot
Diverse cis factors controlling Alu retrotransposition: What causes Alu elements to die?
inferredcites →https://doi.org/10.1101/gr.2693004openalex-snapshot
Whole-genome analysis ofAlurepeat elements reveals complex evolutionary history
inferredcites →https://doi.org/10.1101/gr.3492605openalex-snapshot
Under the genomic radar: The Stealth model of Alu amplification
inferredcites →https://doi.org/10.1371/journal.pgen.1002384openalex-snapshot
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1004482openalex-snapshot
Inference of Transposable Element Ancestry
inferredcites →https://doi.org/10.1534/genetics.105.052241openalex-snapshot
Population Genetics Models of Competition Between Transposable Element Subfamilies

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inferred← citeshttps://doi.org/10.1093/sysbio/syx088openalex-snapshot
A Two-State Model of Tree Evolution and Its Applications to Alu Retrotransposition
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