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Natural diversity of the malaria vector Anopheles gambiae

https://doi.org/10.1101/096289
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Vegetation History and Climate Changes in Africa North and South of the Equator (10° S to 10° N) During the Last Glacial Maximum
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Runs of Homozygosity in European Populations
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Haplotype Estimation Using Sequencing Reads
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The changing risk of Plasmodium falciparum malaria infection in Africa: 2000–10: a spatial and temporal analysis of transmission intensity
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Averting a malaria disaster: will insecticide resistance derail malaria control?
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Genome-wide detection and characterization of positive selection in human populations
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A map of human genome variation from population-scale sequencing
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A synthetic homing endonuclease-based gene drive system in the human malaria mosquito
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An integrated map of genetic variation from 1,092 human genomes
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Signatures of aestivation and migration in Sahelian malaria mosquito populations
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The effect of malaria control on Plasmodium falciparum in Africa between 2000 and 2015
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A CRISPR-Cas9 gene drive system targeting female reproduction in the malaria mosquito vector Anopheles gambiae
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Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation
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Exploring population size changes using SNP frequency spectra
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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Methods and models for unravelling human evolutionary history
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Molecular evidence of incipient speciation within Anopheles gambiae s.s. in West Africa
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Simultaneous identification of species and molecular forms of the Anopheles gambiae complex by PCR‐RFLP
inferredcites →https://doi.org/10.1073/pnas.0914274108openalex-snapshot
Rapid, global demographic expansions after the origins of agriculture
inferredcites →https://doi.org/10.1073/pnas.1316851110openalex-snapshot
Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae
inferredcites →https://doi.org/10.1073/pnas.1418892112openalex-snapshot
Adaptive introgression in an African malaria mosquito coincident with the increased usage of insecticide-treated bed nets
inferredcites →https://doi.org/10.1073/pnas.1503793112openalex-snapshot
Bantu expansion shows that habitat alters the route and pace of human dispersals
inferredcites →https://doi.org/10.1073/pnas.1521077112openalex-snapshot
Highly efficient Cas9-mediated gene drive for population modification of the malaria vector mosquito Anopheles stephensi
inferredcites →https://doi.org/10.1086/681436openalex-snapshot
Middle to Late Holocene Paleoclimatic Change and the Early Bantu Expansion in the Rain Forests of Western Central Africa
inferredcites →https://doi.org/10.1093/beheco/arq114openalex-snapshot
A behavioral mechanism underlying ecological divergence in the malaria mosquito Anopheles gambiae
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Rift Valley complex as a barrier to gene flow for Anopheles gambiae in Kenya
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Population Structure of Anopheles gambiae in Africa
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Mosquito (Diptera: Culicidae) Dispersal—The Long and Short of it
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Larval Development of the Molecular Forms of Anopheles gambiae (Diptera: Culicidae) in Different Habitats: A Transplantation Experiment
inferredcites →https://doi.org/10.1093/molbev/msq002openalex-snapshot
Field, Genetic, and Modeling Approaches Show Strong Positive Selection Acting upon an Insecticide Resistance Mutation in Anopheles gambiae s.s.
inferredcites →https://doi.org/10.1093/molbev/msr199openalex-snapshot
Gene Flow-Dependent Genomic Divergence between Anopheles gambiae M and S Forms
inferredcites →https://doi.org/10.1098/rspb.2014.1448openalex-snapshot
Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples
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Fast model-based estimation of ancestry in unrelated individuals
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Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
inferredcites →https://doi.org/10.1111/eva.12075openalex-snapshot
Geographic population structure of the A frican malaria vector A nopheles gambiae suggests a role for the forest‐savannah biome transition as a barrier to gene flow
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Habitat segregation and ecological character displacement in cryptic African malaria mosquitoes
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THE IMPORTANCE OF MOSQUITO BEHAVIOURAL ADAPTATIONS TO MALARIA CONTROL IN AFRICA
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A comparative study of voltage‐gated sodium channels in the Insecta: implications for pyrethroid resistance in Anopheline and other Neopteran species
inferredcites →https://doi.org/10.1111/j.1365-2583.2007.00764.xopenalex-snapshot
Genetic exchange in 2La inversion heterokaryotypes of Anopheles gambiae
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Density, survival and dispersal of Anopheles gambiae complex mosquitoes in a West African Sudan savanna village
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03172.xopenalex-snapshot
Evidence for subdivision within the M molecular form of Anopheles gambiae
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04256.xopenalex-snapshot
Polymorphism of intron‐1 in the voltage‐gated sodium channel gene of Anopheles gambiae s.s. populations from Cameroon with emphasis on insecticide knockdown resistance mutations
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04531.xopenalex-snapshot
Genetic association of physically unlinked islands of genomic divergence in incipient species of Anopheles gambiae
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05339.xopenalex-snapshot
Asymmetric introgression between the M and S forms of the malaria vector, Anopheles gambiae, maintains divergence despite extensive hybridization
inferredcites →https://doi.org/10.1111/mec.13572openalex-snapshot
Evolution of GOUNDRY , a cryptic subgroup of Anopheles gambiae s.l., and its impact on susceptibility to Plasmodium infection
inferredcites →https://doi.org/10.1111/mec.13840openalex-snapshot
The last bastion? X chromosome genotyping of Anopheles gambiae species pair males from a hybrid zone reveals complex recombination within the major candidate ‘genomic island of speciation’
inferredcites →https://doi.org/10.1126/science.1077769openalex-snapshot
A Polytene Chromosome Analysis of the Anopheles gambiae Species Complex
inferredcites →https://doi.org/10.1126/science.1193036openalex-snapshot
SNP Genotyping Defines Complex Gene-Flow Boundaries Among African Malaria Vector Mosquitoes
inferredcites →https://doi.org/10.1126/science.1195755openalex-snapshot
Widespread Divergence Between Incipient Anopheles gambiae Species Revealed by Whole Genome Sequences
inferredcites →https://doi.org/10.1126/science.1225829openalex-snapshot
A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity
inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot
Extensive introgression in a malaria vector species complex revealed by phylogenomics
inferredcites →https://doi.org/10.1136/bmj.2.2009.1openalex-snapshot
Inaugural Lecture on the Possibility of Extirpating Malaria from Certain Localities by a New Method
inferredcites →https://doi.org/10.11646/zootaxa.3619.3.2openalex-snapshot
Anopheles coluzzii and Anopheles amharicus, new members of the Anopheles gambiae complex
inferredcites →https://doi.org/10.1186/1471-2156-13-70openalex-snapshot
Runs of homozygosity and population history in cattle
inferredcites →https://doi.org/10.1186/1471-2164-11-459openalex-snapshot
Genome mapping and characterization of the Anopheles gambiae heterochromatin
inferredcites →https://doi.org/10.1186/1475-2875-10-16openalex-snapshot
Chlorfenapyr: a new insecticide with novel mode of action can control pyrethroid resistant malaria vectors
inferredcites →https://doi.org/10.1186/1475-2875-12-13openalex-snapshot
Shifts in malaria vector species composition and transmission dynamics along the Kenyan coast over the past 20 years
inferredcites →https://doi.org/10.1186/gb-2007-8-1-r5openalex-snapshot
Update of the Anopheles gambiaePEST genome assembly
inferredcites →https://doi.org/10.1186/s12936-015-0890-1openalex-snapshot
A new class of insecticide for malaria vector control: evaluation of mosquito nets treated singly with indoxacarb (oxadiazine) or with a pyrethroid mixture against Anopheles gambiae and Culex quinquefasciatus
inferredcites →https://doi.org/10.1186/s12936-016-1203-zopenalex-snapshot
Does insecticide resistance contribute to heterogeneities in malaria transmission in The Gambia?
inferredcites →https://doi.org/10.1186/s12936-016-1214-9openalex-snapshot
Genomic signatures of population decline in the malaria mosquito Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pbio.0030285openalex-snapshot
Genomic Islands of Speciation in Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pgen.1000286openalex-snapshot
Field-Caught Permethrin-Resistant Anopheles gambiae Overexpress CYP6P3, a P450 That Metabolises Pyrethroids
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003090openalex-snapshot
Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1004236openalex-snapshot
CYP6 P450 Enzymes and ACE-1 Duplication Produce Extreme and Multiple Insecticide Resistance in the Malaria Mosquito Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pgen.1005141openalex-snapshot
Experimental Swap of Anopheles gambiae's Assortative Mating Preferences Demonstrates Key Role of X-Chromosome Divergence Island in Incipient Sympatric Speciation
inferredcites →https://doi.org/10.1371/journal.pgen.1005199openalex-snapshot
Beyond Glycolysis: GAPDHs Are Multi-functional Enzymes Involved in Regulation of ROS, Autophagy, and Plant Immune Responses
inferredcites →https://doi.org/10.1371/journal.pmed.0040255openalex-snapshot
Increasing Coverage and Decreasing Inequity in Insecticide-Treated Bed Net Use among Rural Kenyan Children
inferredcites →https://doi.org/10.1371/journal.pmed.1002047openalex-snapshot
Age, Spatial, and Temporal Variations in Hospital Admissions with Malaria in Kilifi County, Kenya: A 25-Year Longitudinal Observational Study
inferredcites →https://doi.org/10.1371/journal.pone.0001243openalex-snapshot
Multiple Origins of Knockdown Resistance Mutations in the Afrotropical Mosquito Vector Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pone.0016415openalex-snapshot
The “Far-West” of Anopheles gambiae Molecular Forms
inferredcites →https://doi.org/10.1371/journal.pone.0064939openalex-snapshot
Filling the Gap 115 Years after Ronald Ross: The Distribution of the Anopheles coluzzii and Anopheles gambiae s.s from Freetown and Monrovia, West Africa
inferredcites →https://doi.org/10.1371/journal.pone.0092662openalex-snapshot
Metabolic and Target-Site Mechanisms Combine to Confer Strong DDT Resistance in Anopheles gambiae
inferredcites →https://doi.org/10.1534/genetics.112.142018openalex-snapshot
Genomic Variation in Natural Populations ofDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.112.148718openalex-snapshot
Breakdown in the Process of Incipient Speciation inAnopheles gambiae
inferredcites →https://doi.org/10.1534/genetics.113.151670openalex-snapshot
Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.113.158758openalex-snapshot
Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family
inferredcites →https://doi.org/10.1534/genetics.115.174664openalex-snapshot
The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
inferredcites →https://doi.org/10.1534/genetics.115.183285openalex-snapshot
Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene
inferredcites →https://doi.org/10.1603/0022-2585(2008)45[1057:hlohbm]2.0.co;2openalex-snapshot
High Levels of Hybridization between Molecular Forms of Anopheles gambiae from Guinea Bissau
inferredcites →https://doi.org/10.7554/elife.10850openalex-snapshot
The kinetochore prevents centromere-proximal crossover recombination during meiosis
inferredcites →https://doi.org/10.7554/elife.17219openalex-snapshot
Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Human Interventions: Driving Forces of Mosquito Evolution
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Gene drives thwarted by emergence of resistant organisms
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The potential for the use of gene drives for pest control in New Zealand: a perspective
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Panoptes: web-based exploration of large scale genome variation data
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Stable feature ranking with logistic regression ensembles
inferred← citeshttps://doi.org/10.1111/eva.12517openalex-snapshot
Dissecting functional components of reproductive isolation among closely related sympatric species of theAnopheles gambiaecomplex
inferred← citeshttps://doi.org/10.1145/3233547.3233571openalex-snapshot
Detecting Chromosomal Inversions from Dense SNPs by Combining PCA and Association Tests
inferred← citeshttps://doi.org/10.1186/s12936-017-1932-7openalex-snapshot
Vector control with driving Y chromosomes: modelling the evolution of resistance
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006796openalex-snapshot
Novel CRISPR/Cas9 gene drive constructs reveal insights into mechanisms of resistance allele formation and drive efficiency in genetically diverse populations
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007039openalex-snapshot
The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito
inferred← citeshttps://doi.org/10.1371/journal.pntd.0007554openalex-snapshot
Complex interplay of evolutionary forces shaping population genomic structure of invasive Aedes albopictus in southern Europe
inferred← citeshttps://doi.org/10.1534/g3.118.200537openalex-snapshot
Signatures of Insecticide Selection in the Genome of Drosophila melanogaster
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Updating the Data on Malaria Vectors in Malaysia: Protocol for a Scoping Review
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The Anopheles gambiae 2La chromosome inversion is associated with susceptibility to Plasmodium falciparum in Africa
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