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Chromatin domains are encoded and molded by isochores: Isochores encode chromatin domains and chromosome compartments

https://doi.org/10.1101/096487
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf02100196openalex-snapshot
Compositional properties of nuclear genes from cold-blooded vertebrates
inferredcites →https://doi.org/10.1007/s00412-005-0039-zopenalex-snapshot
Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
inferredcites →https://doi.org/10.1016/j.cell.2017.04.022openalex-snapshot
Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression
inferredcites →https://doi.org/10.1016/j.celrep.2016.04.085openalex-snapshot
Formation of Chromosomal Domains by Loop Extrusion
inferredcites →https://doi.org/10.1016/j.gene.2008.02.012openalex-snapshot
Mapping DNase-I hypersensitive sites on human isochores
inferredcites →https://doi.org/10.1016/j.molcel.2016.05.018openalex-snapshot
Chromatin Domains: The Unit of Chromosome Organization
inferredcites →https://doi.org/10.1016/j.tig.2015.09.004openalex-snapshot
Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution
inferredcites →https://doi.org/10.1016/j.ygeno.2016.01.001openalex-snapshot
A genomic view on epilepsy and autism candidate genes
inferredcites →https://doi.org/10.1016/s0014-5793(01)03283-5openalex-snapshot
A compact view of isochores in the draft human genome sequence
inferredcites →https://doi.org/10.1016/s0022-2836(76)80105-2openalex-snapshot
An approach to the organization of eukaryotic genomes at a macromolecular level
inferredcites →https://doi.org/10.1016/s0167-7306(00)x0005-1openalex-snapshot
Structural and Evolutionary Genomics: Natural Selection in Genome Evolution
inferredcites →https://doi.org/10.1016/s0378-1119(02)01038-7openalex-snapshot
Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds
inferredcites →https://doi.org/10.1016/s0378-1119(99)00485-0openalex-snapshot
Isochores and the evolutionary genomics of vertebrates
inferredcites →https://doi.org/10.1021/bi00852a033openalex-snapshot
Isolation and characterization of mouse and guinea pig satellite deoxyribonucleic acids
inferredcites →https://doi.org/10.1038/35057062openalex-snapshot
Initial sequencing and analysis of the human genome
inferredcites →https://doi.org/10.1038/544284aopenalex-snapshot
DNA's secret weapon against knots and tangles
inferredcites →https://doi.org/10.1038/nature21429openalex-snapshot
3D structures of individual mammalian genomes studied by single-cell Hi-C
inferredcites →https://doi.org/10.1038/nature21711openalex-snapshot
Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
inferredcites →https://doi.org/10.1038/nature23001openalex-snapshot
Cell-cycle dynamics of chromosomal organization at single-cell resolution
inferredcites →https://doi.org/10.1038/nature24281openalex-snapshot
Two independent modes of chromatin organization revealed by cohesin removal
inferredcites →https://doi.org/10.1038/nsmb.2509openalex-snapshot
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
inferredcites →https://doi.org/10.1073/pnas.0701652104openalex-snapshot
The neoselectionist theory of genome evolution
inferredcites →https://doi.org/10.1073/pnas.0803916105openalex-snapshot
The short-sequence designs of isochores from the human genome
inferredcites →https://doi.org/10.1073/pnas.1518552112openalex-snapshot
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
inferredcites →https://doi.org/10.1093/nar/gkg296openalex-snapshot
DNA helix: the importance of being GC-rich
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a039994openalex-snapshot
The vertebrate genome: isochores and evolution.
inferredcites →https://doi.org/10.1101/095802openalex-snapshot
Targeted degradation of CTCF decouples local insulation of chromosome domains from higher-order genomic compartmentalization
inferredcites →https://doi.org/10.1101/118737openalex-snapshot
Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
inferredcites →https://doi.org/10.1101/gr.138776.112openalex-snapshot
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
inferredcites →https://doi.org/10.1101/gr.4910606openalex-snapshot
An isochore map of human chromosomes
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1236083openalex-snapshot
Organization of the Mitotic Chromosome
inferredcites →https://doi.org/10.1126/science.4001930openalex-snapshot
The Mosaic Genome of Warm-Blooded Vertebrates
inferredcites →https://doi.org/10.1126/science.aaf8084openalex-snapshot
Spatial organization of chromatin domains and compartments in single chromosomes
inferredcites →https://doi.org/10.1186/1471-2105-10-442openalex-snapshot
G+C content dominates intrinsic nucleosome occupancy
inferredcites →https://doi.org/10.1186/s13059-015-0866-zopenalex-snapshot
Ancient DNA and the rewriting of human history: be sparing with Occam’s razor
inferredcites →https://doi.org/10.1186/s13059-016-1043-8openalex-snapshot
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
inferredcites →https://doi.org/10.1371/journal.pone.0005361openalex-snapshot
Betulin Is a Potent Anti-Tumor Agent that Is Enhanced by Cholesterol
inferredcites →https://doi.org/10.1371/journal.pone.0005972openalex-snapshot
Mapping Insertions, Deletions and SNPs on Venter's Chromosomes
inferredcites →https://doi.org/10.1371/journal.pone.0143739openalex-snapshot
Chromosome Architecture and Genome Organization
inferredcites →https://doi.org/10.1371/journal.pone.0168023openalex-snapshot
An Isochore Framework Underlies Chromatin Architecture
inferredcites →https://doi.org/10.4137/ebo.s27693openalex-snapshot
Segmenting the Human Genome into Isochores

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/bies.201900106openalex-snapshot
The Genomic Code: A Pervasive Encoding/Molding of Chromatin Structures and a Solution of the “Non‐Coding DNA” Mystery
inferred← citeshttps://doi.org/10.1007/s00439-025-02772-8openalex-snapshot
The emerging sequence grammar of 3D genome organisation
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