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High rates of human faecal carriage of mcr-1- positive multi-drug resistant isolates emerge in China in association with successful plasmid families

https://doi.org/10.1101/106575
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Susceptibility Testing of the Polymyxins: Where Are We Now?
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Detection of plasmid mediated colistin resistance (MCR-1) in Escherichia coli and Salmonella enterica isolated from poultry and swine in Spain
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ISApl1, a novel insertion element of Actinobacillus pleuropneumoniae, prevents ApxIV-based serological detection of serotype 7 strain AP76
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Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
inferredcites →https://doi.org/10.1016/s1473-3099(15)00538-1openalex-snapshot
Dissemination of the mcr-1 colistin resistance gene
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Dissemination of the mcr-1 colistin resistance gene
inferredcites →https://doi.org/10.1016/s1473-3099(16)00006-2openalex-snapshot
Plasmid-mediated carbapenem and colistin resistance in a clinical isolate of Escherichia coli
inferredcites →https://doi.org/10.1016/s1473-3099(16)00007-4openalex-snapshot
Co-occurrence of extended spectrum β lactamase and MCR-1 encoding genes on plasmids
inferredcites →https://doi.org/10.1016/s1473-3099(16)00009-8openalex-snapshot
Colistin resistance gene mcr-1 in extended-spectrum β-lactamase-producing and carbapenemase-producing Gram-negative bacteria in Germany
inferredcites →https://doi.org/10.1016/s1473-3099(16)00010-4openalex-snapshot
Colistin resistance gene mcr-1 and pHNSHP45 plasmid in human isolates of Escherichia coli and Klebsiella pneumoniae
inferredcites →https://doi.org/10.1016/s1473-3099(16)00012-8openalex-snapshot
Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid
inferredcites →https://doi.org/10.1016/s1473-3099(16)00056-6openalex-snapshot
Emergence of the mcr-1 colistin resistance gene in carbapenem-resistant Enterobacteriaceae
inferredcites →https://doi.org/10.1016/s1473-3099(16)00061-xopenalex-snapshot
Early emergence of mcr-1 in Escherichia coli from food-producing animals
inferredcites →https://doi.org/10.1016/s1473-3099(16)00062-1openalex-snapshot
Dissemination of the mcr-1 colistin resistance gene
inferredcites →https://doi.org/10.1016/s1473-3099(16)00063-3openalex-snapshot
Dissemination of the mcr-1 colistin resistance gene
inferredcites →https://doi.org/10.1016/s1473-3099(16)00067-0openalex-snapshot
Dissemination of the mcr-1 colistin resistance gene
inferredcites →https://doi.org/10.1038/ncomms1152openalex-snapshot
Insertion sequence-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions
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Co-spread of metal and antibiotic resistance within ST3-IncHI2 plasmids from E. coli isolates of food-producing animals
inferredcites →https://doi.org/10.1055/s-0034-1398390openalex-snapshot
Colistin: How should It Be Dosed for the Critically Ill?
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv383openalex-snapshot
Bandage: interactive visualization of de novo genome assemblies
inferredcites →https://doi.org/10.1093/jac/dkq101openalex-snapshot
Plasmid double locus sequence typing for IncHI2 plasmids, a subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum β-lactamase and quinolone resistance genes
inferredcites →https://doi.org/10.1093/jac/dkt180openalex-snapshot
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
inferredcites →https://doi.org/10.1093/jac/dkw122openalex-snapshot
Colistin resistance genemcr-1 inEscherichia coliisolates from humans and retail meats, Taiwan
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1111/j.1574-6976.2011.00268.xopenalex-snapshot
Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance
inferredcites →https://doi.org/10.1128/aac.00345-16openalex-snapshot
Emergence of the Plasmid-Mediated mcr-1 Gene in Colistin-Resistant Enterobacter aerogenes and Enterobacter cloacae
inferredcites →https://doi.org/10.1128/aac.00440-16openalex-snapshot
Detection of the mcr-1 Colistin Resistance Gene in Carbapenem-Resistant Enterobacteriaceae from Different Hospitals in China
inferredcites →https://doi.org/10.1128/aac.00501-15openalex-snapshot
bla CTX-M-1/9/1 Hybrid Genes May Have Been Generated from bla CTX-M-15 on an IncI2 Plasmid
inferredcites →https://doi.org/10.1128/aac.00550-16openalex-snapshot
Complete Sequences of mcr-1 -Harboring Plasmids from Extended-Spectrum-β-Lactamase- and Carbapenemase-Producing Enterobacteriaceae
inferredcites →https://doi.org/10.1128/aac.00774-16openalex-snapshot
Complete Nucleotide Sequence of an IncI2 Plasmid Coharboring bla CTX-M-55 and mcr-1
inferredcites →https://doi.org/10.1128/aac.00775-15openalex-snapshot
Dissemination of IncI2 Plasmids That Harbor the bla CTX-M Element among Clinical Salmonella Isolates
inferredcites →https://doi.org/10.1128/aac.01457-16openalex-snapshot
A Model for Transposition of the Colistin Resistance Gene mcr-1 by IS Apl1
inferredcites →https://doi.org/10.1128/aac.01707-08openalex-snapshot
Resistance Plasmid Families in Enterobacteriaceae
inferredcites →https://doi.org/10.1128/aac.02155-12openalex-snapshot
Genetic Characterization of IncI2 Plasmids Carrying bla CTX-M-55 Spreading in both Pets and Food Animals in China
inferredcites →https://doi.org/10.1128/aac.02773-14openalex-snapshot
Complete Sequencing of IncI1 Sequence Type 2 Plasmid pJIE512b Indicates Mobilization of bla CMY-2 from an IncA/C Plasmid
inferredcites →https://doi.org/10.1128/aem.00337-16openalex-snapshot
Use of Colistin and Other Critical Antimicrobials on Pig and Chicken Farms in Southern Vietnam and Its Association with Resistance in Commensal Escherichia coli Bacteria
inferredcites →https://doi.org/10.1128/jcm.00378-15openalex-snapshot
Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses
inferredcites →https://doi.org/10.1128/mbio.02162-15openalex-snapshot
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
inferredcites →https://doi.org/10.1186/gb-2013-14-5-r47openalex-snapshot
REAPR: a universal tool for genome assembly evaluation
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1371/journal.pcbi.1004041openalex-snapshot
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
inferredcites →https://doi.org/10.2807/1560-7917.es.2016.21.13.30183openalex-snapshot
Detection of mcr-1 colistin resistance gene in polyclonal Escherichia coli isolates in Barcelona, Spain, 2012 to 2015
inferredcites →https://doi.org/10.2807/1560-7917.es.2016.21.6.30135openalex-snapshot
Prevalence of mcr-1 in commensal Escherichia coli from French livestock, 2007 to 2014
inferredcites →https://doi.org/10.2807/1560-7917.es.2016.21.8.30144openalex-snapshot
Impact of food animal trade on the spread of mcr-1-mediated colistin resistance, Tunisia, July 2015
inferredcites →https://doi.org/10.2807/1560-7917.es.2016.21.9.30149openalex-snapshot
Presence of mcr-1-positive Enterobacteriaceae in retail chicken meat but not in humans in the Netherlands since 2009
inferredcites →https://doi.org/10.2807/1560-7917.es.2016.21.9.30155openalex-snapshot
Plasmid-mediated colistin resistance (mcr-1 gene): three months later, the story unfolds
inferredcites →https://doi.org/10.3201/eid2209.160692openalex-snapshot
Chromosomal Locations ofmcr-1andblaCTX-M-15in Fluoroquinolone-ResistantEscherichia coliST410
inferredcites →https://doi.org/10.3389/fmicb.2014.00643openalex-snapshot
Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria
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