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Genome sequencing reveals Zika virus diversity and spread in the Americas
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/cjs.5550360302openalex-snapshot
Bayesian analysis of elapsed times in continuous‐time Markov chains
inferredcites →https://doi.org/10.1002/jmv.23241openalex-snapshot
A diagnostic polymerase chain reaction assay for Zika virus
inferredcites →https://doi.org/10.1007/bf02352289openalex-snapshot
Maximum-likelihood models for combined analyses of multiple sequence data
inferredcites →https://doi.org/10.1016/j.cell.2015.06.007openalex-snapshot
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
inferredcites →https://doi.org/10.1016/j.jcv.2008.05.005openalex-snapshot
One-step RT-PCR for detection of Zika virus
inferredcites →https://doi.org/10.1016/j.jiph.2015.12.002openalex-snapshot
Dengue, chikungunya and Zika co-infection in a patient from Colombia
inferredcites →https://doi.org/10.1016/j.syapm.2008.07.001openalex-snapshot
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
inferredcites →https://doi.org/10.1016/j.virusres.2015.02.006openalex-snapshot
Functions of the 3′ and 5′ genome RNA regions of members of the genus Flavivirus
inferredcites →https://doi.org/10.1038/nature19827openalex-snapshot
1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nprot.2017.066openalex-snapshot
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
inferredcites →https://doi.org/10.1056/nejmc1609015openalex-snapshot
Zika Virus and the Guillain–Barré Syndrome — Case Series from Seven Countries
inferredcites →https://doi.org/10.1056/nejmoa1411680openalex-snapshot
Clinical Illness and Outcomes in Patients with Ebola in Sierra Leone
inferredcites →https://doi.org/10.1056/nejmoa1613108openalex-snapshot
Persistence of Zika Virus in Body Fluids — Final Report
inferredcites →https://doi.org/10.1056/nejmp1600297openalex-snapshot
Zika Virus in the Americas — Yet Another Arbovirus Threat
inferredcites →https://doi.org/10.1073/pnas.89.22.10915openalex-snapshot
Amino acid substitution matrices from protein blocks.
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/bts429openalex-snapshot
Gene and translation initiation site prediction in metagenomic sequences
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/molbev/msi103openalex-snapshot
Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences
inferredcites →https://doi.org/10.1093/molbev/msj021openalex-snapshot
Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences
inferredcites →https://doi.org/10.1093/molbev/msq262openalex-snapshot
A Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mss084openalex-snapshot
Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty
inferredcites →https://doi.org/10.1093/molbev/mss243openalex-snapshot
Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkn814openalex-snapshot
PlasmoDB: a functional genomic database for malaria parasites
inferredcites →https://doi.org/10.1093/nar/gkv1189openalex-snapshot
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
inferredcites →https://doi.org/10.1093/nar/gkv1290openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/ve/vew007openalex-snapshot
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
inferredcites →https://doi.org/10.1097/qad.0b013e328328f76eopenalex-snapshot
HIV-1 evolution in gag and env is highly correlated but exhibits different relationships with viral load and the immune response
inferredcites →https://doi.org/10.1101/104794openalex-snapshot
Multiple introductions of Zika virus into the United States revealed through genomic epidemiology
inferredcites →https://doi.org/10.1101/105171openalex-snapshot
Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas
inferredcites →https://doi.org/10.1126/science.1259657openalex-snapshot
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
inferredcites →https://doi.org/10.1126/science.aaf5036openalex-snapshot
Zika virus in the Americas: Early epidemiological and genetic findings
inferredcites →https://doi.org/10.1128/cmr.00035-09openalex-snapshot
Dengue Virus Pathogenesis: an Integrated View
inferredcites →https://doi.org/10.1128/jcm.00877-16openalex-snapshot
Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing
inferredcites →https://doi.org/10.1128/jvi.01738-09openalex-snapshot
Yellow Fever Virus Exhibits Slower Evolutionary Dynamics than Dengue Virus
inferredcites →https://doi.org/10.1128/jvi.73.4.2938-2946.1999openalex-snapshot
Acute Hepatitis C Virus Structural Gene Sequences as Predictors of Persistent Viremia: Hypervariable Region 1 as a Decoy
inferredcites →https://doi.org/10.1186/1743-422x-10-311openalex-snapshot
Quantitative real-time PCR detection of Zika virus and evaluation with field-caught Mosquitoes
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1186/preaccept-1698056557139770openalex-snapshot
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
inferredcites →https://doi.org/10.1186/s12862-015-0312-6openalex-snapshot
Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models
inferredcites →https://doi.org/10.1186/s12916-015-0348-xopenalex-snapshot
Emergence and potential for spread of Chikungunya virus in Brazil
inferredcites →https://doi.org/10.1186/s13690-017-0233-5openalex-snapshot
Zika virus disease, microcephaly and Guillain-Barré syndrome in Colombia: epidemiological situation during 21 months of the Zika virus outbreak, 2015–2017
inferredcites →https://doi.org/10.1371/currents.outbreaks.4635a54dbffba2156fb2fd76dc49f65eopenalex-snapshot
Imported Zika Virus Infection from the Cook Islands into Australia, 2014
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1371/journal.pone.0042882openalex-snapshot
Selective Depletion of rRNA Enables Whole Transcriptome Profiling of Archival Fixed Tissue
inferredcites →https://doi.org/10.1371/journal.pone.0063496openalex-snapshot
Dengue Virus Type 3 Adaptive Changes during Epidemics in São Jose de Rio Preto, Brazil, 2006–2007
inferredcites →https://doi.org/10.1371/journal.ppat.0030201openalex-snapshot
A Single Mutation in Chikungunya Virus Affects Vector Specificity and Epidemic Potential
inferredcites →https://doi.org/10.15585/mmwr.mm6613e1openalex-snapshot
Vital Signs: Update on Zika Virus–Associated Birth Defects and Evaluation of All U.S. Infants with Congenital Zika Virus Exposure — U.S. Zika Pregnancy Registry, 2016
inferredcites →https://doi.org/10.18637/jss.v025.i01openalex-snapshot
FactoMineR : An R Package for Multivariate Analysis
inferredcites →https://doi.org/10.18637/jss.v034.i12openalex-snapshot
glmulti : An R Package for Easy Automated Model Selection with (Generalized) Linear Models
inferredcites →https://doi.org/10.18637/jss.v070.i01openalex-snapshot
missMDA : A Package for Handling Missing Values in Multivariate Data Analysis
inferredcites →https://doi.org/10.2807/1560-7917.es2014.19.4.20685openalex-snapshot
First case of laboratory-confirmed Zika virus infection imported into Europe, November 2013
inferredcites →https://doi.org/10.3201/eid1408.080287openalex-snapshot
Genetic and Serologic Properties of Zika Virus Associated with an Epidemic, Yap State, Micronesia, 2007
inferredcites →https://doi.org/10.3201/eid2101.140894openalex-snapshot
Detection of Zika Virus in Urine
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41598-017-09797-8openalex-snapshot
Sofosbuvir protects Zika virus-infected mice from mortality, preventing short- and long-term sequelae
inferred← citeshttps://doi.org/10.1101/105171openalex-snapshot
Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas
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