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Improving prediction of compound function from chemical structure using chemical-genetic networks

https://doi.org/10.1101/112698
0 signed · 28 inferred · view as graph

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-60761-839-3_5openalex-snapshot
Similarity Searching Using 2D Structural Fingerprints
inferredcites →https://doi.org/10.1016/j.cell.2006.06.040openalex-snapshot
Exploring the Mode-of-Action of Bioactive Compounds by Chemical-Genetic Profiling in Yeast
inferredcites →https://doi.org/10.1016/j.drudis.2006.10.005openalex-snapshot
Similarity-based virtual screening using 2D fingerprints
inferredcites →https://doi.org/10.1016/j.drudis.2007.01.011openalex-snapshot
Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches
inferredcites →https://doi.org/10.1016/j.drudis.2009.04.003openalex-snapshot
Navigating structure–activity landscapes
inferredcites →https://doi.org/10.1016/j.drudis.2013.01.007openalex-snapshot
The holistic integration of virtual screening in drug discovery
inferredcites →https://doi.org/10.1016/j.jmgm.2010.05.008openalex-snapshot
Analysis and comparison of 2D fingerprints: Insights into database screening performance using eight fingerprint methods
inferredcites →https://doi.org/10.1016/j.patcog.2010.12.015openalex-snapshot
Supervised principal component analysis: Visualization, classification and regression on subspaces and submanifolds
inferredcites →https://doi.org/10.1021/ci034001xopenalex-snapshot
Analysis and Display of the Size Dependence of Chemical Similarity Coefficients
inferredcites →https://doi.org/10.1021/ci100050topenalex-snapshot
Extended-Connectivity Fingerprints
inferredcites →https://doi.org/10.1021/ci7004093openalex-snapshot
Structure−Activity Landscape Index: Identifying and Quantifying Activity Cliffs
inferredcites →https://doi.org/10.1021/jm100933wopenalex-snapshot
Activity Landscape Representations for Structure−Activity Relationship Analysis
inferredcites →https://doi.org/10.1023/a:1016387816342openalex-snapshot
Effectiveness of graph-based and fingerprint-based similarity measures for virtual screening of 2D chemical structure databases
inferredcites →https://doi.org/10.1038/nature00935openalex-snapshot
Functional profiling of the Saccharomyces cerevisiae genome
inferredcites →https://doi.org/10.1038/nbt919openalex-snapshot
Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways
inferredcites →https://doi.org/10.1038/nchembio.2436openalex-snapshot
Functional annotation of chemical libraries across diverse biological processes
inferredcites →https://doi.org/10.1038/nrd3681openalex-snapshot
Diagnosing the decline in pharmaceutical R&D efficiency
inferredcites →https://doi.org/10.1038/nrd941openalex-snapshot
Integration of virtual and high-throughput screening
inferredcites →https://doi.org/10.1073/pnas.0307490100openalex-snapshot
Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast
inferredcites →https://doi.org/10.1080/01621459.1997.10474007openalex-snapshot
Improvements on Cross-Validation: The .632+ Bootstrap Method
inferredcites →https://doi.org/10.1186/1758-2946-3-1openalex-snapshot
CurlySMILES: a chemical language to customize and annotate encodings of molecular and nanodevice structures
inferredcites →https://doi.org/10.1198/004017002317375064openalex-snapshot
A Modification of the Jaccard–Tanimoto Similarity Index for Diverse Selection of Chemical Compounds Using Binary Strings
inferredcites →https://doi.org/10.2174/1386207043328706openalex-snapshot
Virtual Screening Methods that Complement HTS
inferredcites →https://doi.org/10.2307/1271368openalex-snapshot
Statistical Learning Theory
inferredcites →https://doi.org/10.2307/2413714openalex-snapshot
Measuring and Monitoring Biological Diversity: Standard Methods for Amphibians.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/bioinformatics/btx732openalex-snapshot
MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action
inferred← citeshttps://doi.org/10.1101/111252openalex-snapshot
Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interaction networks
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006532openalex-snapshot
Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions
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