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First landscape of binding to chromosomes for a domesticated mariner transposase in the human genome: diversity of genomic targets of SETMAR isoforms in two colorectal cell lines

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00438-013-0754-8openalex-snapshot

Reliability of the nanopheres-DNA immunization technology to produce polyclonal antibodies directed against human neogenic proteins

inferredcites →https://doi.org/10.1016/j.abb.2010.04.011openalex-snapshot

Regulation of Metnase’s TIR binding activity by its binding partner, Pso4

inferredcites →https://doi.org/10.1016/j.biochi.2008.05.010openalex-snapshot

Expression levels of the human DNA repair protein metnase influence lentiviral genomic integration

inferredcites →https://doi.org/10.1016/j.cancergencyto.2010.04.011openalex-snapshot

The transposase domain protein Metnase/SETMAR suppresses chromosomal translocations

inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot

Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells

inferredcites →https://doi.org/10.1016/j.dnarep.2008.08.002openalex-snapshot

The human set and transposase domain protein Metnase interacts with DNA Ligase IV and enhances the efficiency and accuracy of non-homologous end-joining

inferredcites →https://doi.org/10.1016/j.exphem.2014.02.005openalex-snapshot

Delineation of known and new transcript variants of the SETMAR (Metnase) gene and the expression profile in hematologic neoplasms

inferredcites →https://doi.org/10.1016/j.gene.2013.08.039openalex-snapshot

Transposase concentration controls transposition activity: Myth or reality?

inferredcites →https://doi.org/10.1016/j.mce.2004.04.018openalex-snapshot

Ovarian granulosa cell lines

inferredcites →https://doi.org/10.1016/j.ympev.2015.03.009openalex-snapshot

A survey of transposable element classification systems – A call for a fundamental update to meet the challenge of their diversity and complexity

inferredcites →https://doi.org/10.1021/bi200333kopenalex-snapshot

Biochemical Characterization of Metnase’s Endonuclease Activity and Its Role in NHEJ Repair

inferredcites →https://doi.org/10.1021/bi7005477openalex-snapshot

Biochemical Characterization of a SET and Transposase Fusion Protein, Metnase: Its DNA Binding and DNA Cleavage Activity

inferredcites →https://doi.org/10.1038/nbt.1630openalex-snapshot

GREAT improves functional interpretation of cis-regulatory regions

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nprot.2012.088openalex-snapshot

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs

inferredcites →https://doi.org/10.1073/pnas.0503676102openalex-snapshot

The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair

inferredcites →https://doi.org/10.1073/pnas.0601161103openalex-snapshot

Birth of a chimeric primate gene by capture of the transposase gene from a mobile element

inferredcites →https://doi.org/10.1073/pnas.1013571108openalex-snapshot

Methylation of histone H3 lysine 36 enhances DNA repair by nonhomologous end-joining

inferredcites →https://doi.org/10.1074/jbc.m113.533216openalex-snapshot

The DDN Catalytic Motif Is Required for Metnase Functions in Non-homologous End Joining (NHEJ) Repair and Replication Restart

inferredcites →https://doi.org/10.1074/jbc.m115.641530openalex-snapshot

A Proteomic Strategy Identifies Lysine Methylation of Splicing Factor snRNP70 by the SETMAR Enzyme

inferredcites →https://doi.org/10.1074/jbc.m800150200openalex-snapshot

Human Pso4 Is a Metnase (SETMAR)-binding Partner That Regulates Metnase Function in DNA Repair

inferredcites →https://doi.org/10.1074/mcp.m700115-mcp200openalex-snapshot

Protein Expression Profiling of Breast Cancer Cells by Dissociable Antibody Microarray (DAMA) Staining

inferredcites →https://doi.org/10.1074/mcp.m800258-mcp200openalex-snapshot

Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions

inferredcites →https://doi.org/10.1093/bioinformatics/btu372openalex-snapshot

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data

inferredcites →https://doi.org/10.1093/nar/gkn560openalex-snapshot

The SET and transposase domain protein Metnase enhances chromosome decatenation: regulation by automethylation

inferredcites →https://doi.org/10.1093/nar/gkr1104openalex-snapshot

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

inferredcites →https://doi.org/10.1128/mcb.01899-06openalex-snapshot

The Human SETMAR Protein Preserves Most of the Activities of the Ancestral Hsmar1 Transposase

inferredcites →https://doi.org/10.1128/mcb.02027-06openalex-snapshot

The Ancient mariner Sails Again: Transposition of the Human Hsmar1 Element by a Reconstructed Transposase and Activities of the SETMAR Protein on Transposon Ends

inferredcites →https://doi.org/10.1158/0008-5472.can-09-3513openalex-snapshot

Cell-Free Nucleic Acids Circulating in the Plasma of Colorectal Cancer Patients Induce the Oncogenic Transformation of Susceptible Cultured Cells

inferredcites →https://doi.org/10.1182/blood-2008-08-175760openalex-snapshot

Metnase mediates chromosome decatenation in acute leukemia cells

inferredcites →https://doi.org/10.1186/s12859-016-1055-0openalex-snapshot

DensityMap: a genome viewer for illustrating the densities of features

inferredcites →https://doi.org/10.1371/journal.pcbi.1000071openalex-snapshot

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

inferredcites →https://doi.org/10.1371/journal.pcbi.1003326openalex-snapshot

Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data

inferredcites →https://doi.org/10.1371/journal.pone.0023693openalex-snapshot

Nuclear Importation of Mariner Transposases among Eukaryotes: Motif Requirements and Homo-Protein Interactions

inferredcites →https://doi.org/10.1371/journal.pone.0131699openalex-snapshot

Cell Free DNA of Tumor Origin Induces a ‘Metastatic’ Expression Profile in HT-29 Cancer Cell Line

inferredcites →https://doi.org/10.1371/journal.pone.0139418openalex-snapshot

The SET Domain Is Essential for Metnase Functions in Replication Restart and the 5’ End of SS-Overhang Cleavage

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.csbj.2021.07.010openalex-snapshot

Genome-wide mapping of binding sites of the transposase-derived SETMAR protein in the human genome

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