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Quantitative evaluation of two-photon calcium imaging modalities for high-speed volumetric calcium imaging in scattering brain tissue

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Computational neuroscience: beyond the local circuit

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On simplicity and complexity in the brave new world of large-scale neuroscience

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Genetic Dissection of Neural Circuits

inferredcites →https://doi.org/10.1016/j.neuron.2009.08.009openalex-snapshot

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

inferredcites →https://doi.org/10.1016/j.neuron.2012.02.011openalex-snapshot

Imaging Calcium in Neurons

inferredcites →https://doi.org/10.1016/j.neuron.2015.12.012openalex-snapshot

Simultaneous Multi-plane Imaging of Neural Circuits

inferredcites →https://doi.org/10.1016/s0006-3495(01)76173-5openalex-snapshot

Highly Nonlinear Photodamage in Two-Photon Fluorescence Microscopy

inferredcites →https://doi.org/10.1016/s0006-3495(99)77396-0openalex-snapshot

Video-Rate Scanning Two-Photon Excitation Fluorescence Microscopy and Ratio Imaging with Cameleons

inferredcites →https://doi.org/10.1021/jp0041609openalex-snapshot

Nonlinear Saturation and Determination of the Two-Photon Absorption Cross Section of Green Fluorescent Protein

inferredcites →https://doi.org/10.1038/4580openalex-snapshot

Predictive coding in the visual cortex: a functional interpretation of some extra-classical receptive-field effects

inferredcites →https://doi.org/10.1038/nature12354openalex-snapshot

Ultrasensitive fluorescent proteins for imaging neuronal activity

inferredcites →https://doi.org/10.1038/nbt.3708openalex-snapshot

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

inferredcites →https://doi.org/10.1038/ncomms4997openalex-snapshot

Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks

inferredcites →https://doi.org/10.1038/nmeth.1398openalex-snapshot

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

inferredcites →https://doi.org/10.1038/nmeth.1453openalex-snapshot

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

inferredcites →https://doi.org/10.1038/nmeth.1552openalex-snapshot

Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing

inferredcites →https://doi.org/10.1038/nmeth.1851openalex-snapshot

Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes

inferredcites →https://doi.org/10.1038/nmeth.2277openalex-snapshot

Fast multicolor 3D imaging using aberration-corrected multifocus microscopy

inferredcites →https://doi.org/10.1038/nmeth.2434openalex-snapshot

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

inferredcites →https://doi.org/10.1038/nmeth.2637openalex-snapshot

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light

inferredcites →https://doi.org/10.1038/nmeth.2964openalex-snapshot

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

inferredcites →https://doi.org/10.1038/nmeth.3476openalex-snapshot

Continuous volumetric imaging via an optical phase-locked ultrasound lens

inferredcites →https://doi.org/10.1038/nmeth.4033openalex-snapshot

Random-access scanning microscopy for 3D imaging in awake behaving animals

inferredcites →https://doi.org/10.1038/nmeth.4040openalex-snapshot

Fast volumetric calcium imaging across multiple cortical layers using sculpted light

inferredcites →https://doi.org/10.1038/nmeth818openalex-snapshot

Deep tissue two-photon microscopy

inferredcites →https://doi.org/10.1038/nn.2116openalex-snapshot

Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity

inferredcites →https://doi.org/10.1038/nphoton.2014.323openalex-snapshot

Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms

inferredcites →https://doi.org/10.1038/nrn1888openalex-snapshot

Neural correlations, population coding and computation

inferredcites →https://doi.org/10.1038/nrn2558openalex-snapshot

State-dependent computations: spatiotemporal processing in cortical networks

inferredcites →https://doi.org/10.1038/nrn3962openalex-snapshot

From the neuron doctrine to neural networks

inferredcites →https://doi.org/10.1073/pnas.1111662109openalex-snapshot

Aberration-free three-dimensional multiphoton imaging of neuronal activity at kHz rates

inferredcites →https://doi.org/10.1093/brain/120.4.701openalex-snapshot

The columnar organization of the neocortex

inferredcites →https://doi.org/10.1101/011320openalex-snapshot

Wide field-of-view, multi-region two-photon imaging of neuronal activity in vivo

inferredcites →https://doi.org/10.1126/science.1100035openalex-snapshot

Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy

inferredcites →https://doi.org/10.1126/science.1236939openalex-snapshot

The Brain Activity Map

inferredcites →https://doi.org/10.1145/1141911.1141976openalex-snapshot

Light field microscopy

inferredcites →https://doi.org/10.1146/annurev.bioeng.2.1.399openalex-snapshot

Two-Photon Excitation Fluorescence Microscopy

inferredcites →https://doi.org/10.1152/jn.00275.2016openalex-snapshot

Brain heating induced by near-infrared lasers during multiphoton microscopy

inferredcites →https://doi.org/10.1152/jn.00557.2012openalex-snapshot

Brain surface temperature under a craniotomy

inferredcites →https://doi.org/10.1364/boe.6.000353openalex-snapshot

Optimizing and extending light-sculpting microscopy for fast functional imaging in neuroscience

inferredcites →https://doi.org/10.1364/oe.15.011658openalex-snapshot

Multifocal multiphoton microscopy based on multianode photomultiplier tubes

inferredcites →https://doi.org/10.1364/oe.16.004121openalex-snapshot

Wavelength dependence of femtosecond laser ablation threshold of corneal stroma

inferredcites →https://doi.org/10.1364/oe.18.013720openalex-snapshot

A compact acousto-optic lens for 2D and 3D femtosecond based 2-photon microscopy

inferredcites →https://doi.org/10.1364/oe.19.015348openalex-snapshot

Maximizing fluorescence collection efficiency in multiphoton microscopy

inferredcites →https://doi.org/10.1364/oe.23.032573openalex-snapshot

Extended field-of-view and increased-signal 3D holographic illumination with time-division multiplexing

inferredcites →https://doi.org/10.1364/opex.13.001468openalex-snapshot

Scanningless depth-resolved microscopy

inferredcites →https://doi.org/10.1364/opex.13.002153openalex-snapshot

Simultaneous spatial and temporal focusing of femtosecond pulses

inferredcites →https://doi.org/10.1364/optica.3.000517openalex-snapshot

Compressive light-field microscopy for 3D neural activity recording

inferredcites →https://doi.org/10.1371/journal.pone.0001796openalex-snapshot

Characterization and Subcellular Targeting of GCaMP-Type Genetically-Encoded Calcium Indicators

inferredcites →https://doi.org/10.1523/jneurosci.4469-11.2012openalex-snapshot

A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal ImagingIn Vivo

inferredcites →https://doi.org/10.3389/fncir.2013.00065openalex-snapshot

Fast functional imaging of multiple brain regions in intact zebrafish larvae using Selective Plane Illumination Microscopy

inferredcites →https://doi.org/10.3389/fncir.2014.00029openalex-snapshot

Simultaneous imaging of neural activity in three dimensions

inferredcites →https://doi.org/10.3389/neuro.04.006.2009openalex-snapshot

Two-photon imaging with diffractive optical elements

inferredcites →https://doi.org/10.4161/intv.21557openalex-snapshot

Video-rate resonant scanning multiphoton microscopy: An emerging technique for intravital imaging of the tumor microenvironment

inferredcites →https://doi.org/10.7554/elife.12727openalex-snapshot

Sensitive red protein calcium indicators for imaging neural activity

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.bpj.2020.10.027openalex-snapshot

Infrared Excitation Induces Heating and Calcium Microdomain Hyperactivity in Cortical Astrocytes

inferred← citeshttps://doi.org/10.1016/j.cobme.2019.11.004openalex-snapshot

Cellular resolution imaging of neuronal activity across space and time in the mammalian brain

inferred← citeshttps://doi.org/10.1016/j.jneumeth.2021.109173openalex-snapshot

Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods

inferred← citeshttps://doi.org/10.1101/2025.06.17.660119openalex-snapshot

Column-Like Subnetwork Reconstruction in Motor Cortex from Graph-Based 3D High-Density Two-Photon Calcium Imaging

inferred← citeshttps://doi.org/10.1101/211946openalex-snapshot

Two-photon photoactivated voltage imaging in tissue with an Archaerhodopsin-derived reporter

inferred← citeshttps://doi.org/10.1101/321091openalex-snapshot

Two-photon imaging induces brain heating and calcium microdomain hyperactivity in cortical astrocytes

inferred← citeshttps://doi.org/10.3389/fnins.2021.620869openalex-snapshot

Comparative Effects of Event Detection Methods on the Analysis and Interpretation of Ca2+ Imaging Data

inferred← citeshttps://doi.org/10.7554/elife.97598openalex-snapshot