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Cycad coralloid roots contain bacterial communities including cyanobacteria and Caulobacter spp that encode niche-specific biosynthetic gene clusters

https://doi.org/10.1101/121160
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Morphological and genetic diversity of symbiotic cyanobacteria from cycads
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Physiological Adaptations in Nitrogen-fixing Nostoc–Plant Symbiotic Associations
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Ecology of cyanobacteria II : their diversity in space and time
inferredcites →https://doi.org/10.1007/bf00397709openalex-snapshot
Pure culture and reconstitution of the Anthoceros-Nostoc symbiotic association
inferredcites →https://doi.org/10.1007/bf00409103openalex-snapshot
Isolation of cyanobacteria from the aquatic fern, Azolla
inferredcites →https://doi.org/10.1007/s00253-014-5988-9openalex-snapshot
Differential contributions of two SARP family regulatory genes to indigoidine biosynthesis in Streptomyces lavendulae FRI-5
inferredcites →https://doi.org/10.1007/s10295-012-1207-9openalex-snapshot
An indigoidine biosynthetic gene cluster from Streptomyces chromofuscus ATCC 49982 contains an unusual IndB homologue
inferredcites →https://doi.org/10.1007/s12223-010-0018-5openalex-snapshot
Identification and characterization of an indigoidine-like gene for a blue pigment biosynthesis in Streptomyces aureofaciens CCM 3239
inferredcites →https://doi.org/10.1007/s12275-018-7438-3openalex-snapshot
Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm
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Novel antibacterial azetidine lincosamides
inferredcites →https://doi.org/10.1016/j.femsec.2004.05.001openalex-snapshot
Sequence based data supports a single Nostoc strain in individual coralloid roots of cycads
inferredcites →https://doi.org/10.1016/j.mimet.2015.03.012openalex-snapshot
Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench)
inferredcites →https://doi.org/10.1016/j.phytochem.2006.09.022openalex-snapshot
Proteases in plant root symbiosis
inferredcites →https://doi.org/10.1016/j.phytochem.2007.01.012openalex-snapshot
Bioactive natural products from marine cyanobacteria for drug discovery
inferredcites →https://doi.org/10.1016/s0031-9422(96)00767-4openalex-snapshot
A 3-amino-10-chloro-2-hydroxydecanoic acid-containing tetrapeptide from Oscillatoria agardhii
inferredcites →https://doi.org/10.1016/s0040-4020(01)89033-5openalex-snapshot
Structure of the “heterocyst glycolipids” of the marine cyanobacterium Nodularia harveyana
inferredcites →https://doi.org/10.1016/s0040-4020(02)01326-1openalex-snapshot
Modified peptides from a water bloom of the cyanobacterium Nostoc sp.
inferredcites →https://doi.org/10.1016/s0076-6879(09)04808-3openalex-snapshot
Chapter 8 Methods for In Silico Prediction of Microbial Polyketide and Nonribosomal Peptide Biosynthetic Pathways from DNA Sequence Data
inferredcites →https://doi.org/10.1016/s0168-6496(02)00231-3openalex-snapshot
High cyanobacterial diversity in coralloid roots of cycads revealed by PCR fingerprinting
inferredcites →https://doi.org/10.1016/s0168-6496(98)00095-6openalex-snapshot
Cyanobiont diversity within coralloid roots of selected cycad species
inferredcites →https://doi.org/10.1016/s0254-6299(16)31444-2openalex-snapshot
The identification of the coralloid root endophytes of the southern African cycads and the ability of the isolates to fix dinitrogen
inferredcites →https://doi.org/10.1016/s0378-1097(03)00784-5openalex-snapshot
The cyanobiont in anAzollafern is neitherAnabaenanorNostoc
inferredcites →https://doi.org/10.1021/ja8025278openalex-snapshot
Myxochelin Biosynthesis: Direct Evidence for Two- and Four-Electron Reduction of a Carrier Protein-Bound Thioester
inferredcites →https://doi.org/10.1023/a:1026015921930openalex-snapshot
Microbial Complexes Occurring on the Apogeotropic Roots and in the Rhizosphere of Cycad Plants
inferredcites →https://doi.org/10.1023/a:1026067906000openalex-snapshot
The Structure of Cyanobacterial Communities Formed during the Degradation of Apogeotropic Roots of Cycads
inferredcites →https://doi.org/10.1023/b:mici.0000008373.16642.e7openalex-snapshot
Atypical Cell Forms Overproducing Extracellular Substances in Populations of Cycad Cyanobionts
inferredcites →https://doi.org/10.1038/1921274a0openalex-snapshot
Blue-Green Algae: Growth
inferredcites →https://doi.org/10.1038/ismej.2008.110openalex-snapshot
High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms
inferredcites →https://doi.org/10.1038/nature01128openalex-snapshot
Linearly concatenated cyclobutane lipids form a dense bacterial membrane
inferredcites →https://doi.org/10.1038/nchembio.944openalex-snapshot
YcaO domains use ATP to activate amide backbones during peptide cyclodehydrations
inferredcites →https://doi.org/10.1039/c7np00035aopenalex-snapshot
Mediators of mutualistic microbe–microbe interactions
inferredcites →https://doi.org/10.1071/bi9651135openalex-snapshot
Nitrogen Fixation in the Coralloid Roots of Macrozamia Communis L. Johnson
inferredcites →https://doi.org/10.1071/bt9800271openalex-snapshot
Effects of Fire on the Growth, Nutrient Content and Rate of Nitrogen Fixation of the Cycad Macrozamia riedlei
inferredcites →https://doi.org/10.1071/pp9760349openalex-snapshot
Symbiotic Nitrogen Fixation by Coralloid Roots of the Cycad Macrozamia riedlei : Physiological Characteristics and Ecological Significance
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1093/aob/mcx165openalex-snapshot
The phylogeography of the cycad genus Dioon (Zamiaceae) clarifies its Cenozoic expansion and diversification in the Mexican transition zone
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/femsec/fix006openalex-snapshot
Revisiting life strategy concepts in environmental microbial ecology
inferredcites →https://doi.org/10.1093/gbe/evr121openalex-snapshot
Random Addition Concatenation Analysis: A Novel Approach to the Exploration of Phylogenomic Signal Reveals Strong Agreement between Core and Shell Genomic Partitions in the Cyanobacteria
inferredcites →https://doi.org/10.1093/molbev/msy029openalex-snapshot
Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkv1012openalex-snapshot
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)
inferredcites →https://doi.org/10.1093/nar/gkv437openalex-snapshot
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
inferredcites →https://doi.org/10.1094/mpmi-23-6-0811openalex-snapshot
Host Selection of Symbiotic Cyanobacteria in 31 Species of the Australian Cycad Genus: Macrozamia (Zamiaceae)
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.5322306openalex-snapshot
Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events
inferredcites →https://doi.org/10.1111/j.1469-8137.1980.tb00769.xopenalex-snapshot
ON THE PHYCOBIONTS OF THE CYCAD CORALLOID ROOTS
inferredcites →https://doi.org/10.1111/j.1469-8137.1994.tb02960.xopenalex-snapshot
Reconstitution of the symbiosis of Gunnera manicata Linden: cyanobacterial specificity
inferredcites →https://doi.org/10.1111/j.1529-8817.2007.00448.xopenalex-snapshot
DIVERSITY AND HOST SPECIFICITY OF AZOLLA CYANOBIONTS1
inferredcites →https://doi.org/10.1111/j.1529-8817.2010.00885.xopenalex-snapshot
ISOLATION OF CALOTHRIX RHIZOSOLENIAE (CYANOBACTERIA) STRAIN SC01 FROM CHAETOCEROS (BACILLARIOPHYTA) SPP. DIATOMS OF THE SUBTROPICAL NORTH PACIFIC OCEAN1
inferredcites →https://doi.org/10.1111/j.1574-6941.2011.01288.xopenalex-snapshot
Comparative analysis of cyanobacteria in the rhizosphere and as endosymbionts of cycads in drought-affected soils
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01403.xopenalex-snapshot
Genetic diversity of symbiotic cyanobacteria in Cycas revoluta (Cycadaceae)
inferredcites →https://doi.org/10.1111/tpj.13543openalex-snapshot
Small molecules below‐ground: the role of specialized metabolites in the rhizosphere
inferredcites →https://doi.org/10.1126/science.159.3815.648openalex-snapshot
Somatic Reduction in Cycads
inferredcites →https://doi.org/10.1128/aem.00297-12openalex-snapshot
Production of the Antimicrobial Secondary Metabolite Indigoidine Contributes to Competitive Surface Colonization by the Marine Roseobacter Phaeobacter sp. Strain Y4I
inferredcites →https://doi.org/10.1128/genomea.00021-18openalex-snapshot
Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium Nostoc cycadae Strain WK-1, Isolated from the Coralloid Roots of Cycas revoluta
inferredcites →https://doi.org/10.1128/genomea.01721-15openalex-snapshot
Genome Sequence of Selenium-Solubilizing Bacterium Caulobacter vibrioides T5M6
inferredcites →https://doi.org/10.1128/jb.00343-10openalex-snapshot
CrfA, a Small Noncoding RNA Regulator of Adaptation to Carbon Starvation in Caulobacter crescentus
inferredcites →https://doi.org/10.1128/jb.184.3.654-665.2002openalex-snapshot
Characterization of Indigoidine Biosynthetic Genes in Erwinia chrysanthemi and Role of This Blue Pigment in Pathogenicity
inferredcites →https://doi.org/10.1134/s0026261710030069openalex-snapshot
Morphological and physiological modifications of cyanobacteria in experimental cyanobacterium-actinomycete associations
inferredcites →https://doi.org/10.1139/m92-218openalex-snapshot
Cyanobiont diversity within and among cycads of one field site
inferredcites →https://doi.org/10.1186/1471-2164-9-75openalex-snapshot
The RAST Server: Rapid Annotations using Subsystems Technology
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1186/s12864-018-4743-5openalex-snapshot
Distinctive characters of Nostoc genomes in cyanolichens
inferredcites →https://doi.org/10.1186/s13568-017-0338-9openalex-snapshot
Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production
inferredcites →https://doi.org/10.1186/s40168-018-0420-9openalex-snapshot
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
inferredcites →https://doi.org/10.1371/journal.pone.0054583openalex-snapshot
Positive Outcomes Influence the Rate and Time to Publication, but Not the Impact Factor of Publications of Clinical Trial Results
inferredcites →https://doi.org/10.1371/journal.pone.0211271openalex-snapshot
Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
inferredcites →https://doi.org/10.17129/botsci.387openalex-snapshot
Historia natural de Dioon Merolae (Zamiaceae)en Chiapas, México
inferredcites →https://doi.org/10.2216/i0031-8884-28-4-464.1openalex-snapshot
Isolation and characterization of endosymbiotic Calothrix (Cyanophyceae) in Encephalartos hildebrandtii (Cycadales)
inferredcites →https://doi.org/10.2307/2806317openalex-snapshot
Dioon Merolae (Zamiaceae), a New Species from Mexico
inferredcites →https://doi.org/10.3389/fgene.2016.00004openalex-snapshot
Increasing Metagenomic Resolution of Microbiome Interactions Through Functional Phylogenomics and Bacterial Sub-Communities

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11274-026-05025-6openalex-snapshot
Cyanobacterial biostimulants boost tomato (Solanum lycopersicum L.) Growth and drought tolerance for climate-resilient cropping systems
inferred← citeshttps://doi.org/10.1371/journal.pone.0211271openalex-snapshot
Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
inferred← citeshttps://doi.org/10.35537/10915/67081openalex-snapshot
Investigación de microorganismos promotores del crecimiento vegetal en cultivos de interés agronómico mediante análisis metagenómico y microbiológico
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