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Draft genome of the Eutardigrade Milnesium tardigradum sheds light on ecdysozoan evolution

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Ice crystallization and freeze tolerance in embryonic stages of the tardigrade Milnesium tardigradum
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Induction of Hsp70 by desiccation, ionising radiation and heat-shock in the eutardigrade Richtersius coronifer
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Antioxidant defences in hydrated and desiccated states of the tardigrade Paramacrobiotus richtersi
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Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature
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SignalP 4.0: discriminating signal peptides from transmembrane regions
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MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
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The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome
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Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade
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Genome of a tardigrade: Horizontal gene transfer or bacterial contamination?
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No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini
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High‐Temperature Tolerance in Anhydrobiotic Tardigrades Is Limited by Glass Transition
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CONSEL: for assessing the confidence of phylogenetic tree selection
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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
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orthAgogue: an agile tool for the rapid prediction of orthology relations
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InterProScan 5: genome-scale protein function classification
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
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Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
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Molecular Anhydrobiology: Identifying Molecules Implicated in Invertebrate Anhydrobiosis
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Ultrafast Approximation for Phylogenetic Bootstrap
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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The InterPro database, an integrated documentation resource for protein families, domains and functional sites
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An efficient algorithm for large-scale detection of protein families
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MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
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The Pfam protein families database: towards a more sustainable future
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Ensembl 2017
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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
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Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
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The Leeuwenhoek Lecture - The problem of anabiosis or latent life: history and current concept
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Assessing the root of bilaterian animals with scalable phylogenomic methods
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Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
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The evolution of the Ecdysozoa
inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
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An expansion of the genome size dataset for the insect order Hymenoptera, with a first test of parasitism and eusociality as possible constraints
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Alternative oxidase: a target and regulator of stress responses
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Ultraviolet radiation tolerance in hydrated and desiccated eutardigrades
inferredcites →https://doi.org/10.1111/j.1469-7998.2008.00427.xopenalex-snapshot
Anhydrobiosis in tardigrades and its effects on longevity traits
inferredcites →https://doi.org/10.1111/j.1469-7998.2008.00474.xopenalex-snapshot
Desiccation tolerance in embryonic stages of the tardigrade
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Trehalose and anhydrobiosis in tardigrades – evidence for divergence in responses to dehydration
inferredcites →https://doi.org/10.1146/annurev-ento-120710-100659openalex-snapshot
Reevaluating the Arthropod Tree of Life
inferredcites →https://doi.org/10.1146/annurev.arplant.48.1.703openalex-snapshot
ALTERNATIVE OXIDASE: From Gene to Function
inferredcites →https://doi.org/10.1146/annurev.ph.54.030192.003051openalex-snapshot
Anhydrobiosis
inferredcites →https://doi.org/10.11646/zootaxa.1579.1.2openalex-snapshot
Notes to the current checklist of Tardigrada
inferredcites →https://doi.org/10.11646/zootaxa.845.1.1openalex-snapshot
Tardigrade taxonomy: an updated check list of the taxa and a list of characters for their identification
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2148-13-230openalex-snapshot
Selective neuronal staining in tardigrades and onychophorans provides insights into the evolution of segmental ganglia in panarthropods
inferredcites →https://doi.org/10.1186/1471-2164-11-168openalex-snapshot
Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer
inferredcites →https://doi.org/10.1186/1752-0509-6-72openalex-snapshot
Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum
inferredcites →https://doi.org/10.1186/jbiol192openalex-snapshot
The gene complement of the ancestral bilaterian - was Urbilateria a monster?
inferredcites →https://doi.org/10.1242/jeb.00935openalex-snapshot
Stress gene (hsp70) sequences and quantitative expression inMilnesium tardigradum(Tardigrada) during active and cryptobiotic stages
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Freeze tolerance, supercooling points and ice formation: comparative studies on the subzero temperature survival of limno-terrestrial tardigrades
inferredcites →https://doi.org/10.1371/journal.pbio.2002266openalex-snapshot
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
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Accelerated Profile HMM Searches
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dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations
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MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
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Proteomic Analysis of Tardigrades: Towards a Better Understanding of Molecular Mechanisms by Anhydrobiotic Organisms
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Two Novel Heat-Soluble Protein Families Abundantly Expressed in an Anhydrobiotic Tardigrade
inferredcites →https://doi.org/10.1371/journal.pone.0045682openalex-snapshot
Comparative proteome analysis of Milnesium tardigradum in early embryonic state versus adults in active and anhydrobiotic state
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Towards Decrypting Cryptobiosis—Analyzing Anhydrobiosis in the Tardigrade Milnesium tardigradum Using Transcriptome Sequencing
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Dry up and survive: the role of antioxidant defences in anhydrobiotic organisms
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Transcriptome Analysis in Tardigrade Species Reveals Specific Molecular Pathways for Stress Adaptations
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Herrn Karl Bonnets Abhandlungen aus der Insektologie
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Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Crystal structure of secretory abundant heat soluble protein 4 from one of the toughest “water bears” micro‐animals Ramazzottius Varieornatus
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Horizontal Gene Transfer in Metazoa: Examples and Methods
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Phylogenetic analysis of forkhead transcription factors in the Panarthropoda
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Tardigrades and their emergence as model organisms
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Miniaturization of tardigrades (water bears): Morphological and genomic perspectives
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The effects of potassium cyanide on tardigrade Paramacrobiotus experimentalis
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Tardigrade proteins: molecular tools in the phenomenon of anhydrobiosis
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Multiomics study of a heterotardigrade, Echinisicus testudo , suggests convergent evolution of anhydrobiosis-related proteins in Tardigrada
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The Emergence of the TardigradeHypsibius exemplarisas a Model System
inferred← citeshttps://doi.org/10.1111/febs.14713openalex-snapshot
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A review of recent progress on stress tolerance in tardigrades
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Examples of Extreme Survival: Tardigrade Genomics and Molecular Anhydrobiology
inferred← citeshttps://doi.org/10.1186/s12864-021-08131-xopenalex-snapshot
Multiomics study of a heterotardigrade, Echinisicus testudo, suggests the possibility of convergent evolution of abundant heat-soluble proteins in Tardigrada
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Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades
inferred← citeshttps://doi.org/10.1186/s12983-021-00400-5openalex-snapshot
Mitochondrial alternative oxidase contributes to successful tardigrade anhydrobiosis
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DSUP modified mesenchymal stem cells exert significant radiation protective effect by enhancing the hematopoietic niche
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The tardigrade Hypsibius exemplaris has the active mitochondrial alternative oxidase that could be studied at animal organismal level
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The Tardigrade Hypsibius Exemplaris as an Emerging Model to Study the Mitochondrial Alternative Oxidase at Animal Organismal Level
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