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SEARCH_16S: A new algorithm for identifying 16S ribosomal RNA genes in contigs and chromosomes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/415287aopenalex-snapshot
X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
inferredcites →https://doi.org/10.1093/nar/25.1.109openalex-snapshot
The RDP (Ribosomal Database Project)
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/29.1.173openalex-snapshot
The RDP-II (Ribosomal Database Project)
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1093/nar/gkm160openalex-snapshot
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/nar/gkm864openalex-snapshot
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
inferredcites →https://doi.org/10.1093/nar/gkr1184openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1101/gr.5890907openalex-snapshot
Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/jb.186.9.2629-2635.2004openalex-snapshot
Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons
inferredcites →https://doi.org/10.1142/9781848165632_0019openalex-snapshot
A NEW GENERATION OF HOMOLOGY SEARCH TOOLS BASED ON PROBABILISTIC INFERENCE
inferredcites →https://doi.org/10.1146/annurev-biochem-062608-160432openalex-snapshot
Assembly of Bacterial Ribosomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.7287/peerj.12835v0.1/reviews/2openalex-snapshot
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