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A chromatin extension model for insulator function based on comparison of high-resolution chromatin conformation capture and polytene banding maps

https://doi.org/10.1101/129577
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The su(Hw) protein insulates expression of the Drosophila melanogaster white gene from chromosomal position‐effects.
inferredcites →https://doi.org/10.1002/jmor.1050560307openalex-snapshot
Somatic synapsis in chironomus, with special reference to the individuality of the chromosomes
inferredcites →https://doi.org/10.1002/jmor.1050690102openalex-snapshot
Studies on the cytology and early embryology of the egg of Drosophila melanogaster
inferredcites →https://doi.org/10.1007/bf00403356openalex-snapshot
Beweise f�r die Chromosomennatur der Kernschleifen in den Kn�uelkernen von Bibio hortulanus L.
inferredcites →https://doi.org/10.1007/bf00587562openalex-snapshot
The suppressor of Hairy-wing binding region is required for gypsy mutagenesis
inferredcites →https://doi.org/10.1007/bf00701359openalex-snapshot
Morphology of transcription units inDrosophila melanogaster
inferredcites →https://doi.org/10.1007/s00412-005-0339-3openalex-snapshot
Chriz, a chromodomain protein specific for the interbands of Drosophila melanogaster polytene chromosomes
inferredcites →https://doi.org/10.1007/s10577-009-9065-7openalex-snapshot
Functional analysis of Drosophila polytene chromosomes decompacted unit: the interband
inferredcites →https://doi.org/10.1016/0092-8674(76)90084-2openalex-snapshot
Isolation, characterization, and structure of the folded interphase genome of Drosophila melanogaster
inferredcites →https://doi.org/10.1016/0092-8674(91)90318-sopenalex-snapshot
A position-effect assay for boundaries of higher order chromosomal domains
inferredcites →https://doi.org/10.1016/0092-8674(95)90008-xopenalex-snapshot
Visualization of chromosomal domains with boundary element-associated factor BEAF-32
inferredcites →https://doi.org/10.1016/j.cell.2008.01.018openalex-snapshot
FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription
inferredcites →https://doi.org/10.1016/j.cell.2012.01.010openalex-snapshot
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.10.026openalex-snapshot
Stable Chromosome Condensation Revealed by Chromosome Conformation Capture
inferredcites →https://doi.org/10.1016/j.cell.2017.03.024openalex-snapshot
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
inferredcites →https://doi.org/10.1016/j.molcel.2004.11.004openalex-snapshot
The Centrosomal Protein CP190 Is a Component of the gypsy Chromatin Insulator
inferredcites →https://doi.org/10.1021/jm00232a012openalex-snapshot
Structure of the peptide antibiotic polypeptin
inferredcites →https://doi.org/10.1038/nature08497openalex-snapshot
An oestrogen-receptor-α-bound human chromatin interactome
inferredcites →https://doi.org/10.1038/nature14450openalex-snapshot
Condensin-driven remodelling of X chromosome topology during dosage compensation
inferredcites →https://doi.org/10.1038/nature21411openalex-snapshot
Complex multi-enhancer contacts captured by genome architecture mapping
inferredcites →https://doi.org/10.1073/pnas.102179399openalex-snapshot
Position-effect protection and enhancer blocking by the chicken β-globin insulator are separable activities
inferredcites →https://doi.org/10.1073/pnas.85.22.8593openalex-snapshot
Mutant gene phenotypes mediated by a Drosophila melanogaster retrotransposon require sequences homologous to mammalian enhancers.
inferredcites →https://doi.org/10.1073/pnas.85.24.9650openalex-snapshot
Sequences of the gypsy transposon of Drosophila necessary for its effects on adjacent genes.
inferredcites →https://doi.org/10.1074/jbc.m605430200openalex-snapshot
Polycomb Complexes and the Propagation of the Methylation Mark at the Drosophila Ubx Gene
inferredcites →https://doi.org/10.1083/jcb.200305013openalex-snapshot
Visualization of chromatin domains created by the gypsy insulator of Drosophila
inferredcites →https://doi.org/10.1093/genetics/147.1.209openalex-snapshot
Chromatin Insulator Elements Block the Silencing of a Target Gene by the Drosophila Polycomb Response Element (PRE) but Allow trans Interactions Between PREs on Different Chromosomes
inferredcites →https://doi.org/10.1093/genetics/148.1.331openalex-snapshot
Polycomb Group Repression Is Blocked by the Drosophila suppressor of Hairy-wing [su(Hw)] Insulator
inferredcites →https://doi.org/10.1093/genetics/20.4.301openalex-snapshot
THE MORPHOLOGY OF THE THIRD CHROMOSOME IN THE SALIVARY GLAND OF DROSOPHILA MELANOGASTER AND A NEW CYTOLOGICAL MAP OF THIS ELEMENT
inferredcites →https://doi.org/10.1093/nar/gkg129openalex-snapshot
The UCSC Genome Browser Database
inferredcites →https://doi.org/10.1093/nar/gkq999openalex-snapshot
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
inferredcites →https://doi.org/10.1093/nar/gkr921openalex-snapshot
modMine: flexible access to modENCODE data
inferredcites →https://doi.org/10.1093/nar/gku1177openalex-snapshot
The UCSC Genome Browser database: 2015 update
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a104022openalex-snapshot
SALIVARY CHROMOSOME MAPS
inferredcites →https://doi.org/10.1101/gad.6.10.1865openalex-snapshot
DNA position-specific repression of transcription by a Drosophila zinc finger protein.
inferredcites →https://doi.org/10.1101/gr.082800.108openalex-snapshot
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1128/mcb.11.4.1894openalex-snapshot
Repression of hsp70 heat shock gene transcription by the suppressor of hairy-wing protein of Drosophila melanogaster.
inferredcites →https://doi.org/10.1128/mcb.12.5.2424openalex-snapshot
A Group of scs Elements Function as Domain Boundaries in an Enhancer-Blocking Assay
inferredcites →https://doi.org/10.1134/s1022795410100285openalex-snapshot
Functional organization of interbands in Drosophila polytene chromosomes
inferredcites →https://doi.org/10.1134/s1022795411040144openalex-snapshot
Identification and molecular genetic characterization of the polytene chromosome interbands in Drosophila melanogaster
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2011-12-4-r34openalex-snapshot
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
inferredcites →https://doi.org/10.1242/jcs.01292openalex-snapshot
Identification of the Drosophila interband-specific protein Z4 as a DNA-binding zinc-finger protein determining chromosomal structure
inferredcites →https://doi.org/10.1371/journal.pgen.1000814openalex-snapshot
A Comprehensive Map of Insulator Elements for the Drosophila Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1002266openalex-snapshot
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
inferredcites →https://doi.org/10.1371/journal.pone.0025960openalex-snapshot
Identical Functional Organization of Nonpolytene and Polytene Chromosomes in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.106.056002openalex-snapshot
The Drosophila Boundary Element-Associated Factors BEAF-32A and BEAF-32B Affect Chromatin Structure
inferredcites →https://doi.org/10.7554/elife.03737openalex-snapshot
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1371/journal.pone.0192634openalex-snapshot
Tethering of CHROMATOR and dCTCF proteins results in decompaction of condensed bands in the Drosophila melanogaster polytene chromosomes but does not affect their transcription and replication timing
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