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VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data

https://doi.org/10.1101/131235
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
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Gene amplification in cancer
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Mapping copy number variation by population-scale genome sequencing
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Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
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Telomerase activation by genomic rearrangements in high-risk neuroblastoma
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Emerging landscape of oncogenic signatures across human cancers
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CONSERTING: integrating copy-number analysis with structural-variation detection
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Receptor tyrosine kinase ErbB4 modulates neuroblast migration and placement in the adult forebrain
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Reactivation of epigenetically silenced HER4/ERBB4 results in apoptosis of breast tumor cells
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Activating ERBB4 mutations in non-small cell lung cancer
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High-resolution characterization of the pancreatic adenocarcinoma genome
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Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format
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Amplification and Overexpression of MDM2 in Primary (de novo) Glioblastomas
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Neuroblastoma and MYCN
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FOUNDATION OF EVALUATION
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PDGFRA Amplification is Common in Pediatric and Adult High‐Grade Astrocytomas and Identifies a Poor Prognostic Group in IDH 1 Mutant Glioblastoma
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Activation of proto-oncogenes by disruption of chromosome neighborhoods
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Oncogenic EGFR Signaling Networks in Glioma
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A Fluorescence in Situ Hybridization Map of 6q Deletions in Acute Lymphocytic Leukemia
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Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons
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Fluorescence in situ hybridization (FISH): an increasingly demanded tool for biomarker research and personalized medicine
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Genome-Wide Analysis of Neuroblastomas using High-Density Single Nucleotide Polymorphism Arrays
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Glioblastoma Multiforme Oncogenomics and Signaling Pathways

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inferred← citeshttps://doi.org/10.1002/gepi.22260openalex-snapshot
Population‐wide copy number variation calling using variant call format files from 6,898 individuals
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