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Genomic and chromatin features shaping meiotic double-strand break formation and repair in mice

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1460-2075.1994.tb06913.xopenalex-snapshot

Changes in chromatin structure at recombination initiation sites during yeast meiosis.

inferredcites →https://doi.org/10.1002/j.1460-2075.1995.tb00138.xopenalex-snapshot

The nucleotide mapping of DNA double‐strand breaks at the CYS3 initiation site of meiotic recombination in Saccharomyces cerevisiae.

inferredcites →https://doi.org/10.1002/j.1460-2075.1995.tb00139.xopenalex-snapshot

The location and structure of double‐strand DNA breaks induced during yeast meiosis: evidence for a covalently linked DNA‐protein intermediate.

inferredcites →https://doi.org/10.1007/s00018-006-6463-2openalex-snapshot

Telomeres and meiosis in health and disease

inferredcites →https://doi.org/10.1007/s00412-015-0542-9openalex-snapshot

Sex chromosome recombination failure, apoptosis, and fertility in male mice

inferredcites →https://doi.org/10.1007/s00412-015-0544-7openalex-snapshot

A surge of late-occurring meiotic double-strand breaks rescues synapsis abnormalities in spermatocytes of mice with hypomorphic expression of SPO11

inferredcites →https://doi.org/10.1007/s10577-017-9552-1openalex-snapshot

The long zinc finger domain of PRDM9 forms a highly stable and long-lived complex with its DNA recognition sequence

inferredcites →https://doi.org/10.1016/0092-8674(90)90072-mopenalex-snapshot

A pathway for generation and processing of double-strand breaks during meiotic recombination in S. cerevisiae

inferredcites →https://doi.org/10.1016/0092-8674(91)90270-9openalex-snapshot

Extensive 3′-overhanging, single-stranded DNA associated with the meiosis-specific double-strand breaks at the ARG4 recombination initiation site

inferredcites →https://doi.org/10.1016/0092-8674(92)90446-jopenalex-snapshot

DMC1: A meiosis-specific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression

inferredcites →https://doi.org/10.1016/0092-8674(92)90447-kopenalex-snapshot

Rad51 protein involved in repair and recombination in S. cerevisiae is a RecA-like protein

inferredcites →https://doi.org/10.1016/j.cell.2011.02.009openalex-snapshot

A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation

inferredcites →https://doi.org/10.1016/j.cell.2016.09.035openalex-snapshot

The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair

inferredcites →https://doi.org/10.1016/j.celrep.2013.08.035openalex-snapshot

Molecular Basis for the Regulation of the H3K4 Methyltransferase Activity of PRDM9

inferredcites →https://doi.org/10.1016/j.molcel.2010.08.017openalex-snapshot

Comprehensive, Fine-Scale Dissection of Homologous Recombination Outcomes at a Hot Spot in Mouse Meiosis

inferredcites →https://doi.org/10.1016/j.molcel.2010.11.032openalex-snapshot

Temporally and Biochemically Distinct Activities of Exo1 during Meiosis: Double-Strand Break Resection and Resolution of Double Holliday Junctions

inferredcites →https://doi.org/10.1016/j.molcel.2016.10.010openalex-snapshot

Nbs1 Converts the Human Mre11/Rad50 Nuclease Complex into an Endo/Exonuclease Machine Specific for Protein-DNA Adducts

inferredcites →https://doi.org/10.1016/j.molcel.2016.10.017openalex-snapshot

Phosphorylated CtIP Functions as a Co-factor of the MRE11-RAD50-NBS1 Endonuclease in DNA End Resection

inferredcites →https://doi.org/10.1016/j.semcdb.2016.02.019openalex-snapshot

Mechanisms of germ line genome instability

inferredcites →https://doi.org/10.1016/s0092-8674(00)80378-5openalex-snapshot

Interhomolog Bias during Meiotic Recombination: Meiotic Functions Promote a Highly Differentiated Interhomolog-Only Pathway

inferredcites →https://doi.org/10.1016/s0092-8674(00)81876-0openalex-snapshot

Meiosis-Specific DNA Double-Strand Breaks Are Catalyzed by Spo11, a Member of a Widely Conserved Protein Family

inferredcites →https://doi.org/10.1038/35072078openalex-snapshot

Meiotic recombination hot spots and cold spots

inferredcites →https://doi.org/10.1038/386414a0openalex-snapshot

An atypical topoisomerase II from archaea with implications for meiotic recombination

inferredcites →https://doi.org/10.1038/cddis.2013.269openalex-snapshot

Role for rodent Smc6 in pericentromeric heterochromatin domains during spermatogonial differentiation and meiosis

inferredcites →https://doi.org/10.1038/embor.2010.79openalex-snapshot

Nucleosome occupancy landscape and dynamics at mouse recombination hotspots

inferredcites →https://doi.org/10.1038/nature01262openalex-snapshot

Initial sequencing and comparative analysis of the mouse genome

inferredcites →https://doi.org/10.1038/nature03872openalex-snapshot

Endonucleolytic processing of covalent protein-linked DNA double-strand breaks

inferredcites →https://doi.org/10.1038/nature09869openalex-snapshot

Genome-wide analysis reveals novel molecular features of mouse recombination hotspots

inferredcites →https://doi.org/10.1038/nature10508openalex-snapshot

ATM controls meiotic double-strand-break formation

inferredcites →https://doi.org/10.1038/nature10515openalex-snapshot

Bidirectional resection of DNA double-strand breaks by Mre11 and Exo1

inferredcites →https://doi.org/10.1038/nature11089openalex-snapshot

Genetic recombination is directed away from functional genomic elements in mice

inferredcites →https://doi.org/10.1038/nature13120openalex-snapshot

Homologue engagement controls meiotic DNA break number and distribution

inferredcites →https://doi.org/10.1038/nature13771openalex-snapshot

Sae2 promotes dsDNA endonuclease activity within Mre11–Rad50–Xrs2 to resect DNA breaks

inferredcites →https://doi.org/10.1038/nature13993openalex-snapshot

Tel1ATM-mediated interference suppresses clustered meiotic double-strand-break formation

inferredcites →https://doi.org/10.1038/nature16931openalex-snapshot

Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice

inferredcites →https://doi.org/10.1038/ncomms5370openalex-snapshot

Primate evolution of the recombination regulator PRDM9

inferredcites →https://doi.org/10.1038/ng.172openalex-snapshot

Mouse segmental duplication and copy number variation

inferredcites →https://doi.org/10.1038/ng.213openalex-snapshot

A common sequence motif associated with recombination hot spots and genome instability in humans

inferredcites →https://doi.org/10.1038/ng.3068openalex-snapshot

Mouse tetrad analysis provides insights into recombination mechanisms and hotspot evolutionary dynamics

inferredcites →https://doi.org/10.1038/ng910openalex-snapshot

Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot

inferredcites →https://doi.org/10.1038/nrg.2015.25openalex-snapshot

Mechanisms underlying structural variant formation in genomic disorders

inferredcites →https://doi.org/10.1038/nrg1346openalex-snapshot

Where the crossovers are: recombination distributions in mammals

inferredcites →https://doi.org/10.1038/nrg3245openalex-snapshot

Human aneuploidy: mechanisms and new insights into an age-old problem

inferredcites →https://doi.org/10.1038/nrg3573openalex-snapshot

Meiotic recombination in mammals: localization and regulation

inferredcites →https://doi.org/10.1038/nrm2849openalex-snapshot

Genome destabilization by homologous recombination in the germ line

inferredcites →https://doi.org/10.1038/nrm3546openalex-snapshot

The ATM protein kinase: regulating the cellular response to genotoxic stress, and more

inferredcites →https://doi.org/10.1038/nsmb.2585openalex-snapshot

Nucleosome dynamics regulates DNA processing

inferredcites →https://doi.org/10.1073/pnas.0701965104openalex-snapshot

Meiotic crossover hotspots contained in haplotype block boundaries of the mouse genome

inferredcites →https://doi.org/10.1073/pnas.1117937108openalex-snapshot

Meiotic double-strand breaks occur once per pair of (sister) chromatids and, via Mec1/ATR and Tel1/ATM, once per quartet of chromatids

inferredcites →https://doi.org/10.1073/pnas.97.17.9537openalex-snapshot

Restriction of ectopic recombination by interhomolog interactions during Saccharomyces cerevisiae meiosis

inferredcites →https://doi.org/10.1074/jbc.m113.523183openalex-snapshot

Trimethylation of Histone H3 Lysine 36 by Human Methyltransferase PRDM9 Protein

inferredcites →https://doi.org/10.1093/bioinformatics/14.1.48openalex-snapshot

Combining evidence using p-values: application to sequence homology searches.

inferredcites →https://doi.org/10.1093/emboj/18.21.6177openalex-snapshot

Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11

inferredcites →https://doi.org/10.1093/genetics/140.1.55openalex-snapshot

Factors that affect the location and frequency of meiosis-induced double-strand breaks in Saccharomyces cerevisiae.

inferredcites →https://doi.org/10.1093/nar/gkp1251openalex-snapshot

Anatomy of mouse recombination hot spots

inferredcites →https://doi.org/10.1101/cshperspect.a016618openalex-snapshot

Meiotic Recombination: The Essence of Heredity

inferredcites →https://doi.org/10.1101/cshperspect.a016634openalex-snapshot

Mechanism and Regulation of Meiotic Recombination Initiation

inferredcites →https://doi.org/10.1101/gad.213652.113openalex-snapshot

Numerical constraints and feedback control of double-strand breaks in mouse meiosis

inferredcites →https://doi.org/10.1101/gad.257840.114openalex-snapshot

DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination

inferredcites →https://doi.org/10.1101/gad.265561.115openalex-snapshot

Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hot spots in mice

inferredcites →https://doi.org/10.1101/gad.270009.115openalex-snapshot

The evolutionary turnover of recombination hot spots contributes to speciation in mice

inferredcites →https://doi.org/10.1101/gad.274928.115openalex-snapshot

Structural basis for human PRDM9 action at recombination hot spots

inferredcites →https://doi.org/10.1101/gr.124123.111openalex-snapshot

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

inferredcites →https://doi.org/10.1101/gr.170167.113openalex-snapshot

PRDM9 binding organizes hotspot nucleosomes and limits Holliday junction migration

inferredcites →https://doi.org/10.1101/gr.172122.114openalex-snapshot

Evolutionarily diverse determinants of meiotic DNA break and recombination landscapes across the genome

inferredcites →https://doi.org/10.1101/gr.213587.116openalex-snapshot

Numerical and spatial patterning of yeast meiotic DNA breaks by Tel1

inferredcites →https://doi.org/10.1126/science.1163601openalex-snapshot

A Mouse Speciation Gene Encodes a Meiotic Histone H3 Methyltransferase

inferredcites →https://doi.org/10.1126/science.1182363openalex-snapshot

Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination

inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

inferredcites →https://doi.org/10.1126/science.1219379openalex-snapshot

Rad51 Is an Accessory Factor for Dmc1-Mediated Joint Molecule Formation During Meiosis

inferredcites →https://doi.org/10.1126/science.1256442openalex-snapshot

Recombination initiation maps of individual human genomes

inferredcites →https://doi.org/10.1126/science.aak9704openalex-snapshot

A global view of meiotic double-strand break end resection

inferredcites →https://doi.org/10.1128/mcb.00088-09openalex-snapshot

Locally, Meiotic Double-Strand Breaks Targeted by Gal4BD-Spo11 Occur at Discrete Sites with a Sequence Preference

inferredcites →https://doi.org/10.1128/mcb.00874-07openalex-snapshot

A Highly Polymorphic Meiotic Recombination Mouse Hot Spot Exhibits Incomplete Repair

inferredcites →https://doi.org/10.1146/annurev-genet-110711-155423openalex-snapshot

Initiation of Meiotic Recombination: How and Where? Conservation and Specificities Among Eukaryotes

inferredcites →https://doi.org/10.1146/annurev-genet-120213-092304openalex-snapshot

Self-Organization of Meiotic Recombination Initiation: General Principles and Molecular Pathways

inferredcites →https://doi.org/10.1146/annurev.genet.41.110306.130301openalex-snapshot

Mammalian Meiotic Recombination Hot Spots

inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164217openalex-snapshot

Copy Number Variation in Human Health, Disease, and Evolution

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r35openalex-snapshot

DNA binding specificities of the long zinc-finger recombination protein PRDM9

inferredcites →https://doi.org/10.1186/s13072-015-0024-6openalex-snapshot

Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage

inferredcites →https://doi.org/10.1371/journal.pbio.1001176openalex-snapshot

Mouse PRDM9 DNA-Binding Specificity Determines Sites of Histone H3 Lysine 4 Trimethylation for Initiation of Meiotic Recombination

inferredcites →https://doi.org/10.1371/journal.pgen.1003044openalex-snapshot

Interallelic and Intergenic Incompatibilities of the Prdm9 (Hst1) Gene in Mouse Hybrid Sterility

inferredcites →https://doi.org/10.1371/journal.pgen.1003732openalex-snapshot

Meiotic Recombination Initiation in and around Retrotransposable Elements in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1371/journal.pgen.1004916openalex-snapshot

PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination

inferredcites →https://doi.org/10.1371/journal.pgen.1005906openalex-snapshot

Hybrid Sterility Locus on Chromosome X Controls Meiotic Recombination Rate in Mouse

inferredcites →https://doi.org/10.1371/journal.pgen.1006146openalex-snapshot

The Meiotic Recombination Activator PRDM9 Trimethylates Both H3K36 and H3K4 at Recombination Hotspots In Vivo

inferredcites →https://doi.org/10.1371/journal.pone.0025498openalex-snapshot

Prdm9, a Major Determinant of Meiotic Recombination Hotspots, Is Not Functional in Dogs and Their Wild Relatives, Wolves and Coyotes

inferredcites →https://doi.org/10.1371/journal.pone.0063144openalex-snapshot

Multiple Pathways Suppress Non-Allelic Homologous Recombination during Meiosis in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1371/journal.pone.0085021openalex-snapshot

Diversity of Prdm9 Zinc Finger Array in Wild Mice Unravels New Facets of the Evolutionary Turnover of this Coding Minisatellite

inferredcites →https://doi.org/10.1534/genetics.104.036509openalex-snapshot

Infrequent Co-conversion of Markers Flanking a Meiotic Recombination Initiation Site in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.4161/cc.26079openalex-snapshot

How much is enough? Control of DNA double-strand break numbers in mouse meiosis

inferredcites →https://doi.org/10.4161/nucl.20325openalex-snapshot

Organization and roles of nucleosomes at mouse meiotic recombination hotspots

inferredcites →https://doi.org/10.7554/elife.24133openalex-snapshot

Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates

inferredcites →https://doi.org/10.7554/elife.24133.040openalex-snapshot

Author response: Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-022-34799-0openalex-snapshot

TOPOVIBL-REC114 interaction regulates meiotic DNA double-strand breaks

inferred← citeshttps://doi.org/10.1038/s41598-020-72867-xopenalex-snapshot

Meiotic analyses show adaptations to maintenance of fertility in X1Y1X2Y2X3Y3X4Y4X5Y5 system of amazon frog Leptodactylus pentadactylus (Laurenti, 1768)

inferred← citeshttps://doi.org/10.1101/203505openalex-snapshot

Modulation of Prdm9 -controlled meiotic chromosome asynapsis overrides hybrid sterility in mice

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007479openalex-snapshot

PRDM9, a driver of the genetic map

inferred← citeshttps://doi.org/10.7554/elife.24133openalex-snapshot

Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates

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