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LEAP: A Generalization of the Landau-Vishkin Algorithm with Custom Gap Penalties

https://doi.org/10.1101/133157
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/pl00009253openalex-snapshot
Faster Approximate String Matching
inferredcites →https://doi.org/10.1016/0022-2836(70)90057-4openalex-snapshot
A general method applicable to the search for similarities in the amino acid sequence of two proteins
inferredcites →https://doi.org/10.1016/0022-2836(81)90087-5openalex-snapshot
Identification of common molecular subsequences
inferredcites →https://doi.org/10.1016/0196-6774(89)90010-2openalex-snapshot
Fast parallel and serial approximate string matching
inferredcites →https://doi.org/10.1016/s0019-9958(85)80046-2openalex-snapshot
Algorithms for approximate string matching
inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot
A map of human genome variation from population-scale sequencing
inferredcites →https://doi.org/10.1038/nmeth.1376openalex-snapshot
Sense from sequence reads: methods for alignment and assembly
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth0810-576openalex-snapshot
mrsFAST: a cache-oblivious algorithm for short-read mapping
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp336openalex-snapshot
SOAP2: an improved ultrafast tool for short read alignment
inferredcites →https://doi.org/10.1093/nar/27.11.2369openalex-snapshot
Alignment of whole genomes
inferredcites →https://doi.org/10.1137/s0097539700370527openalex-snapshot
Approximate String Matching: A Simpler Faster Algorithm
inferredcites →https://doi.org/10.1145/12130.12152openalex-snapshot
Introducing efficient parallelism into approximate string matching and a new serial algorithm
inferredcites →https://doi.org/10.1145/316542.316550openalex-snapshot
A fast bit-vector algorithm for approximate string matching based on dynamic programming
inferredcites →https://doi.org/10.1145/375360.375365openalex-snapshot
A guided tour to approximate string matching
inferredcites →https://doi.org/10.1186/1471-2105-9-11openalex-snapshot
SeqAn An efficient, generic C++ library for sequence analysis
inferredcites →https://doi.org/10.1186/1471-2164-14-s1-s13openalex-snapshot
Accelerating read mapping with FastHASH
inferredcites →https://doi.org/10.1186/1471-2164-14-s5-s13openalex-snapshot
Simple re-instantiation of small databases using cloud computing
inferredcites →https://doi.org/10.1186/s12859-016-0930-zopenalex-snapshot
Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments
inferredcites →https://doi.org/10.48550/arxiv.1111.5572openalex-snapshot
Faster and More Accurate Sequence Alignment with SNAP

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1109/bibm47256.2019.8983162openalex-snapshot
SALT: a fast, memory-efficient and SNP-aware short read alignment tool
inferred← citeshttps://doi.org/10.1186/s12859-021-04088-6openalex-snapshot
Fast and SNP-aware short read alignment with SALT
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